SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): non apoptotic cell death variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ + + 3:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|67|17)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|67|17)
+ + 2:   cell death variant [WBPhenotype:0000729] <3>(57|51) (58|17|5)
+ 1:   programmed cell death variant [WBPhenotype:0001172] <3>(55|48) (56|16|5)
0:   non apoptotic cell death variant [WBPhenotype:0001173] <2>(12|10) (12|4|1)
- 1:   necrotic cell death variant [WBPhenotype:0000415] <1>(11|8) (11|3|1)
- 1:   radiation induced reproductive cell death variant [WBPhenotype:0001851](1|2) (1|1|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.000000000008107Direct
Cullin repeat-like0.0000000002767Direct
DNA repair protein MutS, domain III0.0000007498Direct
Activating enzymes of the ubiquitin-like proteins0.0000008508Direct
POZ domain0.00000248Direct
SET domain0.0001414Direct
Chromo domain-like0.002108Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.01309Inherited
"Winged helix" DNA-binding domain0.01668Inherited
Sm-like ribonucleoproteins0.1877Inherited
ARM repeat0.4906Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Cullin repeat0Direct
Arginine methyltransferase0Direct
Skp1 dimerisation domain-like0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Cullin homology domain0.00000000001557Direct
BTB/POZ domain0.0000001015Direct
DNA repair protein MutS, domain III0.0000009602Direct
Ubiquitin activating enzymes (UBA)0.00000458Direct
Histone lysine methyltransferases0.0008709Direct
ABC transporter ATPase domain-like0.1376Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.000000000006445Direct
Cullin repeat-like0.0000000002208Direct
DNA repair protein MutS, domain III0.0000006095Direct
Activating enzymes of the ubiquitin-like proteins0.0000006918Direct
POZ domain0.000002024Direct
SET domain0.0001168Direct
Chromo domain-like0.001778Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.01131Inherited
"Winged helix" DNA-binding domain0.01445Inherited
Sm-like ribonucleoproteins0.1725Inherited
ARM repeat0.4686Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0000006095Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)