SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): accumulated germline cell corpses

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <5>
+ + + + + + + 7:   physiology variant [WBPhenotype:0000519] <6>(490|567) (491|248|69)
+ + + + + + 6:   cell physiology variant [WBPhenotype:0000536] <27>(143|144) (143|64|18)
+ + + + + 5:   cell death variant [WBPhenotype:0000729] <3>(57|51) (58|17|5)
+ + + + 4:   programmed cell death variant [WBPhenotype:0001172] <3>(55|48) (56|16|5)
+ + + 3:   apoptosis variant [WBPhenotype:0000730] <13>(50|44) (50|13|5)
+ + 2:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (30|10|5)
+ 1:   accumulated cell corpses [WBPhenotype:0000241] <2>(24|25) (25|10|5)
0:   accumulated germline cell corpses [WBPhenotype:0001180](15|18) (16|9|4)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.00000000003793Direct
Cullin repeat-like0.000000001279Direct
ENTH/VHS domain0.0000001042Direct
GroEL apical domain-like0.0000002531Direct
Clathrin adaptor appendage domain0.000001791Direct
GroEL-intermediate domain like0.000005385Direct
GroEL equatorial domain-like0.000005385Direct
POZ domain0.00001273Direct
BAR/IMD domain-like0.00001372Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00002422Direct
Sec1/munc18-like (SM) proteins0.00002422Direct
"Winged helix" DNA-binding domain0.00003046Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
Cullin repeat0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
SCF ubiquitin ligase complex WHB domain0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.0000000001294Direct
BTB/POZ domain0.0000000007081Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000002835Direct
RecA protein-like (ATPase-domain)0.000000636Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000005418Direct
BAR domain0.000015Direct
Ubiquitin activating enzymes (UBA)0.000015Direct
Sec1/munc18-like (SM) proteins0.00004276Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00004276Direct
Clathrin adaptor core protein0.00009524Direct
Phosphotyrosine-binding domain (PTB)0.0001012Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.0003133Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DLC0Direct
Skp1 dimerisation domain-like0Direct
PX domain0Direct
Cullin homology domain0.00000000002982Direct
Cullin repeat-like0.000000001011Direct
ENTH/VHS domain0.00000008305Direct
GroEL apical domain-like0.0000002024Direct
Clathrin adaptor appendage domain0.000001443Direct
GroEL equatorial domain-like0.000004351Direct
GroEL-intermediate domain like0.000004351Direct
POZ domain0.0000103Direct
BAR/IMD domain-like0.00001111Direct
Sec1/munc18-like (SM) proteins0.00001965Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001965Direct
"Winged helix" DNA-binding domain0.00002471Direct
SNARE-like0.0009692Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000004351Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000004351Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.00000685Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00002416Direct
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0009692Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000004351Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0003546Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)