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Worm Phenotype (WP): oocyte morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|64)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|54|17)
+ + 2:   cell type morphology variant [WBPhenotype:0002108] <12>(77|76) (79|44|15)
+ 1:   germ cell morphology variant [WBPhenotype:0000900] <4>(44|41) (45|22|8)
0:   oocyte morphology variant [WBPhenotype:0001260] <9>(27|30) (27|13|3)
- 1:   endomitotic oocytes [WBPhenotype:0000668](6|4) (6|3|1)
- 1:   giant oocytes [WBPhenotype:0000405](0|0) (0|0|0)
- 1:   multiple nuclei oocyte [WBPhenotype:0001955](0|1) (0|0|0)
- 1:   oocyte accumulation [WBPhenotype:0001668](0|0) (0|0|0)
- 1:   oocyte number decreased [WBPhenotype:0001944](8|7) (8|3|1)
- 1:   oocytes disorganized [WBPhenotype:0001925](1|1) (1|0|0)
- 1:   oocytes lack nucleus [WBPhenotype:0001956](2|2) (2|1|0)
- 1:   oocytes small [WBPhenotype:0001945](3|5) (3|3|1)
- 1:   oocytes stacked [WBPhenotype:0001924](0|1) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
GroEL equatorial domain-like0.0000000009989Direct
GroEL-intermediate domain like0.0000000009989Direct
GroEL apical domain-like0.000000004725Direct
PLC-like phosphodiesterases0.000002875Direct
beta-sandwich domain of Sec23/240.00001829Direct
S15/NS1 RNA-binding domain0.00008412Direct
F1F0 ATP synthase subunit C0.00008412Direct
L30e-like0.00009032Direct
Translational machinery components0.0002332Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002909Direct
ACP-like0.0005042Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001581Inherited
Translation proteins SH3-like domain0.04252Inherited
Nucleic acid-binding proteins0.05195Inherited
Ribosomal proteins S24e, L23 and L15e0.1858Inherited
RNA-binding domain, RBD0.1999Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.4127Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.7145Inherited
PH domain-like0.7629Inherited
EF-hand0.8695Inherited
PDZ domain-like0.9139Inherited
SH3-domain0.9782Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
Helical domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Mammalian PLC0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000000003945Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000003327Direct
Pumilio repeat0.0000006488Direct
RecA protein-like (ATPase-domain)0.000009946Direct
Anticodon-binding domain0.00002897Direct
PLC-like (P variant)0.00003563Direct
Translational machinery components0.00008001Direct
L30e/L7ae ribosomal proteins0.0001325Direct
F1F0 ATP synthase subunit C0.0001325Direct
Clathrin adaptor core protein0.0007907Direct
Elongation factors0.0009001Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002465Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.003831Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.006238Inherited
Cold shock DNA-binding domain-like0.1387Inherited
G proteins0.1582Inherited
Canonical RBD0.1747Inherited
Nitrogenase iron protein-like0.1752Inherited
Proteasome subunits0.3558Inherited
Pleckstrin-homology domain (PH domain)0.5577Inherited
PDZ domain0.6314Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
GroEL equatorial domain-like0.0000000007927Direct
GroEL-intermediate domain like0.0000000007927Direct
GroEL apical domain-like0.000000003761Direct
PLC-like phosphodiesterases0.00000233Direct
beta-sandwich domain of Sec23/240.00001491Direct
F1F0 ATP synthase subunit C0.00006885Direct
S15/NS1 RNA-binding domain0.00006885Direct
L30e-like0.00007396Direct
Translational machinery components0.0001917Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002395Direct
ACP-like0.0004172Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001321Inherited
Translation proteins SH3-like domain0.03753Inherited
Nucleic acid-binding proteins0.04608Inherited
Ribosomal proteins S24e, L23 and L15e0.1708Inherited
RNA-binding domain, RBD0.1841Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.3919Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.6939Inherited
PH domain-like0.7436Inherited
EF-hand0.8533Inherited
PDZ domain-like0.8989Inherited
SH3-domain0.9667Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000000007927Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000007927Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00001491Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00006885Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0002495Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0004172Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001321Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000007927Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001321Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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