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Worm Phenotype (WP): germ cell cytoplasmic morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <5>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(444|532) (446|238|67)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <9>(106|107) (110|55|17)
+ + 2:   cell type morphology variant [WBPhenotype:0002108] <12>(78|81) (82|45|15)
+ 1:   germ cell morphology variant [WBPhenotype:0000900] <4>(43|41) (45|23|8)
+ 1:   cell component morphology variant [WBPhenotype:0002089] <20>(84|88) (84|43|9)
0:   germ cell cytoplasmic morphology variant [WBPhenotype:0001300] <2>(11|8) (12|5|2)
- 1:   P granule defective [WBPhenotype:0001301] <2>(4|3) (5|1|0)
- 1:   cytoplasmic processing body variant [WBPhenotype:0001794](7|5) (7|4|2)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Sm-like ribonucleoproteins0.000000005847Direct
ADC-like0.000001658Direct
Cdc48 domain 2-like0.000001658Direct
CCCH zinc finger0.0004175Direct
Zn-binding ribosomal proteins0.00146Inherited
Class II aaRS ABD-related0.005822Inherited
Class II aaRS and biotin synthetases0.006884Inherited
ARM repeat0.02297Inherited
Nucleic acid-binding proteins0.04306Inherited
dsRNA-binding domain-like0.04569Inherited
RNA-binding domain, RBD0.07255Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000007641Direct
Cdc48 N-terminal domain-like0.000002311Direct
Cdc48 domain 2-like0.000002311Direct
CCCH zinc finger0.0002816Direct
Cold shock DNA-binding domain-like0.001265Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.004998Inherited
Actin/HSP700.09616Inherited
Canonical RBD0.136Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sm-like ribonucleoproteins0.000000004625Direct
Cdc48 domain 2-like0.000001333Direct
ADC-like0.000001333Direct
CCCH zinc finger0.0003428Direct
Zn-binding ribosomal proteins0.001212Inherited
Class II aaRS ABD-related0.004924Inherited
Class II aaRS and biotin synthetases0.005836Inherited
ARM repeat0.01994Inherited
Nucleic acid-binding proteins0.03786Inherited
dsRNA-binding domain-like0.04025Inherited
RNA-binding domain, RBD0.06469Inherited
Protein kinase-like (PK-like)0.9527Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.000008408Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0198Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.1612Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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