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Worm Phenotype (WP): gonad morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + 2:   organ system morphology variant [WBPhenotype:0000534] <9>(99|104) (101|47|17)
+ 1:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (50|17|6)
0:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
- 1:   rachis morphology variant [WBPhenotype:0001940] <4>(15|14) (15|6|2)
- 1:   somatic gonad morphology variant [WBPhenotype:0000977] <3>(8|8) (8|3|1)
- 1:   diakinesis region organization variant [WBPhenotype:0001949](1|3) (1|0|0)
- 1:   diplotene region organization variant [WBPhenotype:0001950](2|6) (2|2|0)
- 1:   gonad degenerate [WBPhenotype:0001958](0|0) (0|0|0)
- 1:   gonad small [WBPhenotype:0001957](1|1) (1|0|0)
- 1:   gonad vesiculated [WBPhenotype:0001979](5|4) (5|1|1)
- 1:   male gonad morphology variant [WBPhenotype:0001357](0|0) (0|0|0)
- 1:   pachytene region organization variant [WBPhenotype:0001951](9|11) (9|4|1)
- 1:   rudimentary gonad [WBPhenotype:0001825](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0Direct
14-3-3 protein0Direct
GroEL-intermediate domain like0Direct
GroEL apical domain-like0.00000000000252Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000001046Direct
Sm-like ribonucleoproteins0.000001105Direct
RBP11-like subunits of RNA polymerase0.00004306Direct
Class II aaRS ABD-related0.0001205Direct
S15/NS1 RNA-binding domain0.0001948Direct
L30e-like0.0002502Direct
Translational machinery components0.0005299Direct
Smc hinge domain0.0005299Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0007837Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.003448Inherited
Class II aaRS and biotin synthetases0.007397Inherited
Translation proteins0.01339Inherited
Nucleic acid-binding proteins0.01505Inherited
Translation proteins SH3-like domain0.09024Inherited
Cysteine-rich domain0.1436Inherited
P-loop containing nucleoside triphosphate hydrolases0.154Inherited
HMG-box0.1979Inherited
Tubulin nucleotide-binding domain-like0.2237Inherited
Tubulin C-terminal domain-like0.2237Inherited
Ribosomal proteins S24e, L23 and L15e0.3378Inherited
"Winged helix" DNA-binding domain0.4902Inherited
Protein kinase-like (PK-like)1Inherited
Histone-fold1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
Proteasome subunits0.000000000004952Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000001601Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000003867Direct
RecA protein-like (ATPase-domain)0.00002804Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00003052Direct
Anticodon-binding domain of Class II aaRS0.00006683Direct
Anticodon-binding domain0.00006683Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0002181Direct
L30e/L7ae ribosomal proteins0.0003Direct
Smc hinge domain0.0003Direct
Clathrin adaptor core protein0.001738Inherited
Elongation factors0.00267Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.005263Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00806Inherited
Cold shock DNA-binding domain-like0.04908Inherited
Translational machinery components0.06812Inherited
Laminin-type module0.06812Inherited
HMG-box0.1814Inherited
Tubulin, C-terminal domain0.2051Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.2051Inherited
Tubulin, GTPase domain0.2051Inherited
Cyclin0.5142Inherited
Nucleosome core histones0.9747Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
GroEL-intermediate domain like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL apical domain-like0.000000000001987Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000008377Direct
Sm-like ribonucleoproteins0.0000008935Direct
RBP11-like subunits of RNA polymerase0.00003519Direct
Class II aaRS ABD-related0.00009882Direct
S15/NS1 RNA-binding domain0.00016Direct
L30e-like0.0002058Direct
Translational machinery components0.0004386Direct
Smc hinge domain0.0004386Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0006516Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002917Inherited
Class II aaRS and biotin synthetases0.006318Inherited
Translation proteins0.01158Inherited
Nucleic acid-binding proteins0.01303Inherited
Translation proteins SH3-like domain0.0812Inherited
Cysteine-rich domain0.1309Inherited
P-loop containing nucleoside triphosphate hydrolases0.1405Inherited
HMG-box0.1822Inherited
Tubulin nucleotide-binding domain-like0.2068Inherited
Tubulin C-terminal domain-like0.2068Inherited
Ribosomal proteins S24e, L23 and L15e0.318Inherited
"Winged helix" DNA-binding domain0.4686Inherited
Histone-fold0.9964Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.00003519Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00016Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0007947Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0009456Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002917Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.2068Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002917Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)