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Worm Phenotype (WP): level of protein expression variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + 2:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ 1:   protein expression variant [WBPhenotype:0000112] <6>(39|44) (41|19|6)
0:   level of protein expression variant [WBPhenotype:0001400] <2>(11|12) (11|9|4)
- 1:   protein expression reduced [WBPhenotype:0000120] <5>(7|9) (7|8|3)
- 1:   protein expression increased [WBPhenotype:0000119](2|2) (2|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
Integrin domains0.000005471Direct
Second domain of FERM0.0000572Direct
Spectrin repeat0.00007003Direct
SH2 domain0.0003468Direct
PH domain-like0.0007146Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001216Inherited
SH3-domain0.008832Inherited
Actin-like ATPase domain0.06765Inherited
PX domain0.3263Inherited
"Winged helix" DNA-binding domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalases0Direct
Integrin domains0Direct
LIM domain0.000003531Direct
Third domain of FERM0.00008579Direct
Spectrin repeat0.00008579Direct
Second domain of FERM0.00009913Direct
First domain of FERM0.0001274Direct
SH2 domain0.0003706Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001411Inherited
SH3-domain0.009539Inherited
Actin/HSP700.06638Inherited
Extended AAA-ATPase domain0.2094Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
Integrin domains0.000004449Direct
Second domain of FERM0.0000468Direct
Spectrin repeat0.00005728Direct
SH2 domain0.0002858Direct
PH domain-like0.0005931Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001014Inherited
SH3-domain0.007577Inherited
Actin-like ATPase domain0.06039Inherited
PX domain0.3067Inherited
"Winged helix" DNA-binding domain1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000004449Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.000007663Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0001308Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.000146Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.005047Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.01749Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.05641Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.05641Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.06039Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.000000007288Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00005913Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00009386Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.001014Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)