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Worm Phenotype (WP): pattern protein expression variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <5>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <10>(354|423) (357|200|60)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(343|412) (348|198|59)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(167|178) (172|81|24)
+ + 2:   gene expression variant [WBPhenotype:0000717] <10>(121|132) (128|62|19)
+ 1:   protein expression variant [WBPhenotype:0000112] <6>(38|43) (40|20|6)
0:   pattern protein expression variant [WBPhenotype:0001408] <2>(11|18) (11|6|2)
- 1:   protein expression ectopic [WBPhenotype:0001409](0|1) (0|0|0)
- 1:   protein subcellular localization variant [WBPhenotype:0000436](9|16) (9|6|2)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Cullin homology domain0.0000000002357Direct
Cullin repeat-like0.000000007792Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.000001053Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000279Direct
Riboflavin synthase domain-like0.000279Direct
Sm-like ribonucleoproteins0.002688Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005916Inherited
Protein kinase-like (PK-like)0.04652Inherited
Activating enzymes of the ubiquitin-like proteins0.06385Inherited
Cysteine-rich domain0.1403Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cullin repeat0Direct
14-3-3 protein0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Cullin homology domain0.0000000007174Direct
Armadillo repeat0.0000004485Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000009248Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.000002129Direct
Synaptotagmin-like (S variant)0.00008017Direct
Clathrin coat assembly domain0.0002436Direct
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.01102Inherited
Pleckstrin-homology domain (PH domain)0.05138Inherited
Pumilio repeat0.05509Inherited
PLC-like (P variant)0.106Inherited
Mammalian PLC0.1646Inherited
G proteins0.2215Inherited
Protein kinases, catalytic subunit0.315Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Cullin homology domain0.0000000001854Direct
Cullin repeat-like0.000000006168Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0000008449Direct
Riboflavin synthase domain-like0.0002285Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.0002285Direct
Sm-like ribonucleoproteins0.002251Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005005Inherited
Protein kinase-like (PK-like)0.041Inherited
Activating enzymes of the ubiquitin-like proteins0.05677Inherited
Cysteine-rich domain0.1276Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.0000001484Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0.000004083Direct
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.05677Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)