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Worm Phenotype (WP): pattern protein expression variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + 2:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ 1:   protein expression variant [WBPhenotype:0000112] <6>(39|44) (41|19|6)
0:   pattern protein expression variant [WBPhenotype:0001408] <2>(12|19) (12|6|2)
- 1:   protein expression ectopic [WBPhenotype:0001409](0|1) (0|0|0)
- 1:   protein subcellular localization variant [WBPhenotype:0000436](10|18) (10|6|2)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Cullin homology domain0.0000000002937Direct
Cullin repeat-like0.000000009693Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00000122Direct
Riboflavin synthase domain-like0.0003109Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.0003109Direct
Sm-like ribonucleoproteins0.002827Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.006398Inherited
PX domain0.01379Inherited
Protein kinase-like (PK-like)0.05351Inherited
Activating enzymes of the ubiquitin-like proteins0.06524Inherited
Cysteine-rich domain0.1453Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cullin repeat0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0Direct
14-3-3 protein0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Cullin homology domain0.000000000865Direct
Armadillo repeat0.0000005354Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000001104Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.000002405Direct
Synaptotagmin-like (S variant)0.00009228Direct
Clathrin coat assembly domain0.0002657Direct
PX domain0.01148Inherited
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.01166Inherited
Pleckstrin-homology domain (PH domain)0.05494Inherited
PLC-like (P variant)0.1097Inherited
G proteins0.1355Inherited
Pumilio repeat0.1674Inherited
Mammalian PLC0.1674Inherited
Protein kinases, catalytic subunit0.3424Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Cullin homology domain0.0000000002328Direct
Cullin repeat-like0.000000007728Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0000009864Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.0002561Direct
Riboflavin synthase domain-like0.0002561Direct
Sm-like ribonucleoproteins0.002384Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005453Inherited
PX domain0.01193Inherited
Protein kinase-like (PK-like)0.04751Inherited
Activating enzymes of the ubiquitin-like proteins0.05819Inherited
Cysteine-rich domain0.1325Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.0000001735Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0.000004599Direct
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.05819Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)