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Worm Phenotype (WP): endocytic transport variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ 1:   vesicle trafficking variant [WBPhenotype:0001752] <2>(31|26) (32|10|2)
0:   endocytic transport variant [WBPhenotype:0001421] <2>(31|26) (32|10|2)
- 1:   endocytic transport defect [WBPhenotype:0001422] <6>(24|23) (25|9|1)
- 1:   endosome to lysosome trafficking defective [WBPhenotype:0001754](0|1) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0Direct
14-3-3 protein0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
Sec7 domain0Direct
ARM repeat0.000000000000003586Direct
t-snare proteins0.0000000001279Direct
PH domain-like0.00000002511Direct
GroEL apical domain-like0.00000007085Direct
Class II aaRS ABD-related0.0000001932Direct
WD40 repeat-like0.0000003184Direct
Sec1/munc18-like (SM) proteins0.0000003719Direct
GroEL-intermediate domain like0.0000007982Direct
GroEL equatorial domain-like0.0000007982Direct
FYVE/PHD zinc finger0.000001386Direct
P-loop containing nucleoside triphosphate hydrolases0.000001878Direct
F1F0 ATP synthase subunit C0.000005154Direct
ValRS/IleRS/LeuRS editing domain0.000005154Direct
Class II aaRS and biotin synthetases0.000009313Direct
Nucleic acid-binding proteins0.00003034Direct
Sm-like ribonucleoproteins0.00003671Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.00007027Direct
BEACH domain0.00007027Direct
Actin-like ATPase domain0.00007867Direct
Metal cation-transporting ATPase, ATP-binding domain N0.0001357Direct
Calcium ATPase, transmembrane domain M0.0001979Direct
CAD & PB1 domains0.0003134Direct
Myosin rod fragments0.0004442Direct
Translation proteins0.0005299Direct
Calcium ATPase, transduction domain A0.000712Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001368Inherited
ENTH/VHS domain0.004594Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
14-3-3 protein0Direct
Sec7 domain0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0.000000000002139Direct
t-snare proteins0.0000000005008Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000004905Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000005145Direct
Sec1/munc18-like (SM) proteins0.0000008318Direct
Actin/HSP700.000002846Direct
ValRS/IleRS/LeuRS editing domain0.000009614Direct
Myotubularin-like phosphatases0.000009614Direct
F1F0 ATP synthase subunit C0.000009614Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.00001094Direct
WD40-repeat0.0000527Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00006894Direct
BEACH domain0.0001097Direct
Anticodon-binding domain of Class II aaRS0.0001097Direct
Pumilio repeat0.0001174Direct
Armadillo repeat0.0004269Direct
G proteins0.0005799Direct
Myosin rod fragments0.0008014Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001455Inherited
Pleckstrin-homology domain (PH domain)0.004393Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.004985Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Nicotinic receptor ligand binding domain-like0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
Sec7 domain0Direct
ARM repeat0.00000000000000281Direct
t-snare proteins0.0000000001013Direct
PH domain-like0.00000002005Direct
GroEL apical domain-like0.00000005671Direct
Class II aaRS ABD-related0.0000001552Direct
WD40 repeat-like0.0000002561Direct
Sec1/munc18-like (SM) proteins0.0000002993Direct
GroEL equatorial domain-like0.0000006443Direct
GroEL-intermediate domain like0.0000006443Direct
FYVE/PHD zinc finger0.000001121Direct
P-loop containing nucleoside triphosphate hydrolases0.000001521Direct
F1F0 ATP synthase subunit C0.000004192Direct
ValRS/IleRS/LeuRS editing domain0.000004192Direct
Class II aaRS and biotin synthetases0.000007576Direct
Nucleic acid-binding proteins0.00002477Direct
Sm-like ribonucleoproteins0.00002998Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.00005748Direct
BEACH domain0.00005748Direct
Actin-like ATPase domain0.00006438Direct
Metal cation-transporting ATPase, ATP-binding domain N0.0001113Direct
Calcium ATPase, transmembrane domain M0.0001625Direct
CAD & PB1 domains0.0002582Direct
Myosin rod fragments0.0003671Direct
Translation proteins0.0004385Direct
Calcium ATPase, transduction domain A0.0005909Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001142Inherited
Zinc beta-ribbon0.002751Inherited
ENTH/VHS domain0.003899Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48425,50729
  • 48425 - Sec7 domain
  • 50729 - PH domain-like
  • 0Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000006443Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000006443Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.000004192Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00001393Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00005748Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.00005748Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.0001113Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0001183Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000006443Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.00007441Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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