SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): endocytic transport defect

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ + 2:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|67|17)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|67|17)
+ 1:   endocytic transport variant [WBPhenotype:0001421] <2>(28|26) (29|11|2)
0:   endocytic transport defect [WBPhenotype:0001422] <7>(27|25) (28|11|2)
- 1:   coelomocyte uptake defective [WBPhenotype:0001426] <1>(5|5) (5|2|0)
- 1:   uptake by intestinal cell defective [WBPhenotype:0001763] <1>(3|3) (3|2|1)
- 1:   endocytic recycling defective [WBPhenotype:0001860](0|0) (0|0|0)
- 1:   endosome fusion defective [WBPhenotype:0001638](1|1) (1|0|0)
- 1:   receptor mediated endocytosis defective [WBPhenotype:0001425](12|11) (13|6|1)
- 1:   synaptic vesicle endocytosis variant [WBPhenotype:0001514](0|0) (0|0|0)
- 1:   uptake of yolk defective [WBPhenotype:0001762](0|1) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
14-3-3 protein0Direct
Sec7 domain0Direct
t-snare proteins0.0000000004573Direct
GroEL apical domain-like0.000000213Direct
Class II aaRS ABD-related0.0000005101Direct
Sec1/munc18-like (SM) proteins0.0000008588Direct
GroEL-intermediate domain like0.000002079Direct
GroEL equatorial domain-like0.000002079Direct
Nucleic acid-binding proteins0.00000857Direct
FYVE/PHD zinc finger0.000008775Direct
ValRS/IleRS/LeuRS editing domain0.00001033Direct
F1F0 ATP synthase subunit C0.00001033Direct
Class II aaRS and biotin synthetases0.00002921Direct
Actin-like ATPase domain0.00005323Direct
Sm-like ribonucleoproteins0.0001008Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.0001216Direct
CAD & PB1 domains0.0005351Direct
Myosin rod fragments0.0008437Direct
Translation proteins0.001337Inherited
Lipovitellin-phosvitin complex; beta-sheet shell regions0.001423Inherited
Lipovitellin-phosvitin complex, superhelical domain0.001423Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.002537Inherited
ENTH/VHS domain0.008219Inherited
HSP20-like chaperones0.06216Inherited
PH domain-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Neurotransmitter-gated ion-channel transmembrane pore0Direct
14-3-3 protein0Direct
Nicotinic receptor ligand binding domain-like0Direct
Sec7 domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0.00000000001303Direct
t-snare proteins0.000000001771Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000001485Direct
Actin/HSP700.000001303Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000001347Direct
Sec1/munc18-like (SM) proteins0.000001917Direct
ValRS/IleRS/LeuRS editing domain0.00001923Direct
F1F0 ATP synthase subunit C0.00001923Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.00003419Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0001683Direct
Anticodon-binding domain of Class II aaRS0.0001897Direct
Pumilio repeat0.0002555Direct
Armadillo repeat0.0009058Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0.002208Inherited
Lipovitellin-phosvitin complex, superhelical domain0.002208Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.002719Inherited
Linker histone H1/H50.004606Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.009783Inherited
Pleckstrin-homology domain (PH domain)0.01081Inherited
Myotubularin-like phosphatases1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
14-3-3 protein0Direct
Sec7 domain0Direct
t-snare proteins0.000000000365Direct
GroEL apical domain-like0.0000001723Direct
Class II aaRS ABD-related0.0000004136Direct
Sec1/munc18-like (SM) proteins0.0000006983Direct
GroEL equatorial domain-like0.000001696Direct
GroEL-intermediate domain like0.000001696Direct
Nucleic acid-binding proteins0.00000701Direct
FYVE/PHD zinc finger0.000007178Direct
ValRS/IleRS/LeuRS editing domain0.00000845Direct
F1F0 ATP synthase subunit C0.00000845Direct
Class II aaRS and biotin synthetases0.000024Direct
Actin-like ATPase domain0.00004385Direct
Sm-like ribonucleoproteins0.00008317Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.0001005Direct
CAD & PB1 domains0.0004452Direct
Myosin rod fragments0.000706Direct
Translation proteins0.001121Inherited
Lipovitellin-phosvitin complex; beta-sheet shell regions0.001195Inherited
Lipovitellin-phosvitin complex, superhelical domain0.001195Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.002144Inherited
Zinc beta-ribbon0.004537Inherited
ENTH/VHS domain0.007053Inherited
HSP20-like chaperones0.05539Inherited
PH domain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0Direct
    48425,50729
  • 48425 - Sec7 domain
  • 50729 - PH domain-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000001696Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001696Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00000809Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.00000845Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.0001005Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0001005Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0002867Direct
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.001195Inherited
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0.001195Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001696Direct
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.001195Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)