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Worm Phenotype (WP): receptor mediated endocytosis defective

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   organ system physiology variant [WBPhenotype:0000575] <8>(445|526) (445|228|63)
+ + + + 4:   organism physiology variant [WBPhenotype:0000576] <11>(366|425) (369|192|56)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + 3:   vesicle trafficking variant [WBPhenotype:0001752] <2>(33|27) (34|12|3)
+ + + 3:   sexually dimorphic physiology variant [WBPhenotype:0000889] <2>(25|22) (26|11|2)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <35>(156|154) (158|67|19)
+ + + 3:   reproductive system physiology variant [WBPhenotype:0000613] <6>(432|513) (432|222|63)
+ + 2:   germ cell physiology variant [WBPhenotype:0000987] <6>(28|19) (29|8|1)
+ + 2:   hermaphrodite physiology variant [WBPhenotype:0000929] <5>(22|21) (23|11|2)
+ + 2:   endocytic transport variant [WBPhenotype:0001421] <2>(33|27) (34|12|3)
+ 1:   endocytic transport defect [WBPhenotype:0001422] <7>(27|25) (28|11|2)
+ 1:   oocyte physiology variant [WBPhenotype:0001424] <3>(15|15) (16|7|1)
0:   receptor mediated endocytosis defective [WBPhenotype:0001425](12|11) (13|6|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Class II aaRS ABD-related0.0000000225Direct
GroEL equatorial domain-like0.00000009538Direct
GroEL-intermediate domain like0.00000009538Direct
Class II aaRS and biotin synthetases0.0000007114Direct
F1F0 ATP synthase subunit C0.00000111Direct
ValRS/IleRS/LeuRS editing domain0.00000111Direct
Sm-like ribonucleoproteins0.000003773Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.00002072Direct
Translation proteins0.00006324Direct
CAD & PB1 domains0.00009532Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0003377Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000005226Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0000007008Direct
ValRS/IleRS/LeuRS editing domain0.000001872Direct
F1F0 ATP synthase subunit C0.000001872Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000008003Direct
Anticodon-binding domain of Class II aaRS0.00002985Direct
Armadillo repeat0.00006965Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000324Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0009399Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Class II aaRS ABD-related0.00000001803Direct
GroEL equatorial domain-like0.00000007668Direct
GroEL-intermediate domain like0.00000007668Direct
Class II aaRS and biotin synthetases0.000000576Direct
ValRS/IleRS/LeuRS editing domain0.0000009003Direct
F1F0 ATP synthase subunit C0.0000009003Direct
Sm-like ribonucleoproteins0.000003073Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.00001694Direct
Translation proteins0.00005184Direct
CAD & PB1 domains0.00007834Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002794Direct
Zinc beta-ribbon0.0008848Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000007668Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000007668Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.0000009003Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.00001628Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00001694Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.00001694Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000007668Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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