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Worm Phenotype (WP): receptor mediated endocytosis defective

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <5>
+ + + 3:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ + 2:   endocytic transport variant [WBPhenotype:0001421] <2>(28|26) (29|11|2)
+ + 2:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|155) (154|66|17)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <26>(152|155) (154|66|17)
+ 1:   oocyte physiology variant [WBPhenotype:0001424] <3>(13|14) (15|7|1)
+ 1:   endocytic transport defect [WBPhenotype:0001422] <7>(27|25) (28|11|2)
0:   receptor mediated endocytosis defective [WBPhenotype:0001425](12|11) (13|6|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Class II aaRS ABD-related0.00000002069Direct
GroEL-intermediate domain like0.00000008785Direct
GroEL equatorial domain-like0.00000008785Direct
Class II aaRS and biotin synthetases0.0000006394Direct
F1F0 ATP synthase subunit C0.000001056Direct
ValRS/IleRS/LeuRS editing domain0.000001056Direct
Sm-like ribonucleoproteins0.000003447Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.00002002Direct
Translation proteins0.00005783Direct
CAD & PB1 domains0.00009195Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0003218Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000005278Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0000007034Direct
ValRS/IleRS/LeuRS editing domain0.000001902Direct
F1F0 ATP synthase subunit C0.000001902Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000008094Direct
Anticodon-binding domain of Class II aaRS0.00003045Direct
Armadillo repeat0.0000706Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0003292Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0009482Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Class II aaRS ABD-related0.00000001641Direct
GroEL equatorial domain-like0.00000006988Direct
GroEL-intermediate domain like0.00000006988Direct
Class II aaRS and biotin synthetases0.0000005122Direct
ValRS/IleRS/LeuRS editing domain0.0000008477Direct
F1F0 ATP synthase subunit C0.0000008477Direct
Sm-like ribonucleoproteins0.000002778Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.00001623Direct
Translation proteins0.00004702Direct
CAD & PB1 domains0.0000749Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002637Direct
Zinc beta-ribbon0.0008445Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000006988Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000006988Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.0000008477Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.00001493Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00001623Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.00001623Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000006988Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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