SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): male gonad development variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|69)
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|69)
+ + + 3:   organ system development variant [WBPhenotype:0000530] <10>(79|72) (80|33|13)
+ + 2:   organ system physiology variant [WBPhenotype:0000575] <8>(445|529) (445|229|64)
+ + 2:   reproductive system development variant [WBPhenotype:0000624] <10>(48|41) (49|22|9)
+ 1:   gonad development variant [WBPhenotype:0000691] <2>(20|17) (21|9|5)
+ 1:   reproductive system physiology variant [WBPhenotype:0000613] <6>(432|517) (432|223|64)
0:   male gonad development variant [WBPhenotype:0001675] <3>(10|7) (10|3|2)
- 1:   extra linker cells [WBPhenotype:0002189](0|0) (0|0|0)
- 1:   linker cell absent [WBPhenotype:0001929](0|0) (0|0|0)
- 1:   male somatic gonad development variant [WBPhenotype:0002188](6|5) (6|3|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nucleic acid-binding proteins0.0000002011Direct
GroEL equatorial domain-like0.0000005357Direct
GroEL-intermediate domain like0.0000005357Direct
P-loop containing nucleoside triphosphate hydrolases0.0000005978Direct
GroEL apical domain-like0.000001043Direct
"Winged helix" DNA-binding domain0.0001076Direct
TPR-like0.0003245Direct
Tubulin nucleotide-binding domain-like0.0003516Direct
Tubulin C-terminal domain-like0.0004482Direct
HMG-box0.0005617Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00000004483Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00002324Direct
Group II chaperonin (CCT, TRIC), apical domain0.00004067Direct
Tubulin, GTPase domain0.0004876Direct
Tubulin, C-terminal domain0.0006213Direct
Cyclin0.0007291Direct
HMG-box0.0007795Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nucleic acid-binding proteins0.0000001614Direct
GroEL equatorial domain-like0.0000004315Direct
GroEL-intermediate domain like0.0000004315Direct
P-loop containing nucleoside triphosphate hydrolases0.0000004819Direct
GroEL apical domain-like0.0000008423Direct
"Winged helix" DNA-binding domain0.00008817Direct
TPR-like0.0002673Direct
Tubulin nucleotide-binding domain-like0.0002897Direct
Tubulin C-terminal domain-like0.0003702Direct
HMG-box0.0004651Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000004315Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000004315Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0002897Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000004315Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0002222Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)