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Worm Phenotype (WP): vesicle trafficking variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ 1:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
0:   vesicle trafficking variant [WBPhenotype:0001752] <2>(31|26) (32|10|2)
- 1:   endocytic transport variant [WBPhenotype:0001421] <2>(31|26) (32|10|2)
- 1:   exocytosis variant [WBPhenotype:0000728] <2>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0Direct
14-3-3 protein0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
Sec7 domain0Direct
t-snare proteins0.0000000001366Direct
F1F0 ATP synthase subunit C0.000005343Direct
BEACH domain0.00007233Direct
CAD & PB1 domains0.0003222Direct
Class II aaRS ABD-related0.0003436Direct
Myosin rod fragments0.0004594Direct
GroEL apical domain-like0.000621Direct
Class II aaRS and biotin synthetases0.000771Direct
Sec1/munc18-like (SM) proteins0.001182Inherited
GroEL-intermediate domain like0.001903Inherited
GroEL equatorial domain-like0.001903Inherited
Sm-like ribonucleoproteins0.002188Inherited
ARM repeat0.003111Inherited
ValRS/IleRS/LeuRS editing domain0.003991Inherited
Calcium ATPase, transmembrane domain M0.005685Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.005685Inherited
PH domain-like0.006609Inherited
FYVE/PHD zinc finger0.008703Inherited
Actin-like ATPase domain0.01172Inherited
DNA ligase/mRNA capping enzyme, catalytic domain0.01321Inherited
WD40 repeat-like0.01419Inherited
Calcium ATPase, transduction domain A0.01422Inherited
Translation proteins0.05962Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.07784Inherited
ENTH/VHS domain0.1873Inherited
Nucleic acid-binding proteins0.2439Inherited
P-loop containing nucleoside triphosphate hydrolases0.4531Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
14-3-3 protein0Direct
Sec7 domain0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
t-snare proteins0.0000000005416Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0.000001721Direct
F1F0 ATP synthase subunit C0.00001004Direct
Group II chaperonin (CCT, TRIC), apical domain0.00008881Direct
BEACH domain0.0001135Direct
Anticodon-binding domain of Class II aaRS0.0001135Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0003044Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0003044Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0007126Direct
Myosin rod fragments0.000834Direct
Sec1/munc18-like (SM) proteins0.001037Inherited
ValRS/IleRS/LeuRS editing domain0.003509Inherited
Myotubularin-like phosphatases0.003509Inherited
Actin/HSP700.006628Inherited
Pumilio repeat0.01468Inherited
WD40-repeat0.03398Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0376Inherited
G proteins0.05154Inherited
Armadillo repeat0.05825Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.05825Inherited
Pleckstrin-homology domain (PH domain)0.2944Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Nicotinic receptor ligand binding domain-like0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
Sec7 domain0Direct
t-snare proteins0.0000000001082Direct
F1F0 ATP synthase subunit C0.000004345Direct
BEACH domain0.00005916Direct
CAD & PB1 domains0.0002655Direct
Class II aaRS ABD-related0.0002832Direct
Myosin rod fragments0.0003797Direct
GroEL apical domain-like0.0005146Direct
Class II aaRS and biotin synthetases0.0006409Direct
Sec1/munc18-like (SM) proteins0.0009851Direct
GroEL equatorial domain-like0.001595Inherited
GroEL-intermediate domain like0.001595Inherited
Sm-like ribonucleoproteins0.001838Inherited
ARM repeat0.002627Inherited
ValRS/IleRS/LeuRS editing domain0.003381Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.004837Inherited
Calcium ATPase, transmembrane domain M0.004837Inherited
PH domain-like0.005636Inherited
FYVE/PHD zinc finger0.007464Inherited
Actin-like ATPase domain0.0101Inherited
DNA ligase/mRNA capping enzyme, catalytic domain0.01142Inherited
WD40 repeat-like0.01228Inherited
Calcium ATPase, transduction domain A0.01231Inherited
Zinc beta-ribbon0.04035Inherited
Translation proteins0.05307Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.06978Inherited
ENTH/VHS domain0.1722Inherited
Nucleic acid-binding proteins0.2263Inherited
P-loop containing nucleoside triphosphate hydrolases0.4321Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48425,50729
  • 48425 - Sec7 domain
  • 50729 - PH domain-like
  • 0Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00005916Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.00005916Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.001595Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.001595Inherited
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.003381Inherited
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.004837Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0101Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1406Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.001595Inherited
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.004837Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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