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Worm Phenotype (WP): meiotic progression prophase variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + 4:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + 3:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ + + 3:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)
+ + 2:   oogenesis variant [WBPhenotype:0000186] <5>(33|34) (33|14|2)
+ + 2:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
+ + 2:   cell cycle variant [WBPhenotype:0000740] <6>(35|35) (35|17|4)
+ + 2:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
+ 1:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ 1:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
0:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
- 1:   diplotene progression during oogenesis variant [WBPhenotype:0001947] <2>(11|13) (11|5|1)
- 1:   pachytene progression during oogenesis variant [WBPhenotype:0001946] <2>(19|16) (19|7|2)
- 1:   diakinesis progression during oogenesis variant [WBPhenotype:0001948] <1>(2|4) (2|2|0)
- 1:   homolog association variant [WBPhenotype:0001963](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0.00000000002982Direct
GroEL-intermediate domain like0.00000000002982Direct
GroEL apical domain-like0.0000000001438Direct
Translation proteins SH3-like domain0.00000007171Direct
Class II aaRS and biotin synthetases0.000005207Direct
L30e-like0.0000111Direct
F1F0 ATP synthase subunit C0.00001522Direct
Ribosomal proteins S24e, L23 and L15e0.00001522Direct
S15/NS1 RNA-binding domain0.00001522Direct
Translation proteins0.00002701Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00003733Direct
Translational machinery components0.00004323Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003135Direct
Sm-like ribonucleoproteins0.008565Inherited
Ribosomal protein S5 domain 2-like0.03122Inherited
Nucleotidylyl transferase0.05905Inherited
SNARE-like0.1104Inherited
POZ domain0.1767Inherited
Nucleic acid-binding proteins0.1855Inherited
Protein kinase-like (PK-like)1Inherited
Histone-fold1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000001355Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000001171Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000461Direct
Anticodon-binding domain0.000005528Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000006892Direct
Translational machinery components0.00001068Direct
F1F0 ATP synthase subunit C0.00002594Direct
L30e/L7ae ribosomal proteins0.00002594Direct
Cold shock DNA-binding domain-like0.00004302Direct
Elongation factors0.00009569Direct
Clathrin adaptor core protein0.0001623Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.000527Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0008356Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.00103Inherited
Nitrogenase iron protein-like0.001251Inherited
RecA protein-like (ATPase-domain)0.06172Inherited
BTB/POZ domain0.06172Inherited
Nucleosome core histones1Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0.00000000002356Direct
GroEL equatorial domain-like0.00000000002356Direct
GroEL apical domain-like0.0000000001139Direct
Translation proteins SH3-like domain0.00000005742Direct
Class II aaRS and biotin synthetases0.000004235Direct
L30e-like0.000009033Direct
S15/NS1 RNA-binding domain0.0000124Direct
Ribosomal proteins S24e, L23 and L15e0.0000124Direct
F1F0 ATP synthase subunit C0.0000124Direct
Translation proteins0.00002205Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00003049Direct
Translational machinery components0.00003533Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0002582Direct
Sm-like ribonucleoproteins0.007344Inherited
Ribosomal protein S5 domain 2-like0.02743Inherited
Nucleotidylyl transferase0.05254Inherited
SNARE-like0.09992Inherited
POZ domain0.1622Inherited
Nucleic acid-binding proteins0.1705Inherited
Protein kinase-like (PK-like)1Inherited
Histone-fold1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002356Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000000002356Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000002634Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0000124Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.00002227Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00007869Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002582Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.09992Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.09992Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002356Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002582Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)