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Worm Phenotype (WP): meiotic progression prophase variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   development variant [WBPhenotype:0000518] <7>(508|582) (508|247|69)
+ + + + + 5:   organism development variant [WBPhenotype:0000531] <10>(506|581) (506|247|69)
+ + + + 4:   lethal [WBPhenotype:0000062] <5>(500|579) (500|246|69)
+ + + + 4:   cell development variant [WBPhenotype:0000529] <17>(128|124) (128|49|15)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ + + + 4:   embryonic development variant [WBPhenotype:0000749] <21>(447|536) (447|232|64)
+ + + 3:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|67|17)
+ + + 3:   embryonic lethal [WBPhenotype:0000050] <7>(445|536) (445|231|64)
+ + + 3:   germ cell differentiation variant [WBPhenotype:0000894] <3>(36|39) (36|15|2)
+ + + 3:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (65|26|6)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|67|17)
+ + 2:   cell division variant [WBPhenotype:0000746] <20>(55|57) (55|24|4)
+ + 2:   oogenesis variant [WBPhenotype:0000186] <5>(32|33) (32|14|2)
+ + 2:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
+ + 2:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (63|26|6)
+ 1:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ 1:   meiosis defective early emb [WBPhenotype:0001041] <11>(38|34) (38|16|4)
+ 1:   meiosis variant [WBPhenotype:0000775] <11>(38|34) (38|16|4)
0:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
- 1:   diplotene progression during oogenesis variant [WBPhenotype:0001947] <2>(11|13) (11|5|1)
- 1:   pachytene progression during oogenesis variant [WBPhenotype:0001946] <2>(19|16) (19|7|2)
- 1:   diakinesis progression during oogenesis variant [WBPhenotype:0001948] <1>(2|4) (2|2|0)
- 1:   homolog association variant [WBPhenotype:0001963](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0.00000000002926Direct
GroEL-intermediate domain like0.00000000002926Direct
GroEL apical domain-like0.0000000001413Direct
Translation proteins SH3-like domain0.00000007055Direct
Ribosomal proteins S24e, L23 and L15e0.00001508Direct
S15/NS1 RNA-binding domain0.00001508Direct
F1F0 ATP synthase subunit C0.00001508Direct
Translation proteins0.0000267Direct
Translational machinery components0.00004283Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003108Direct
Sm-like ribonucleoproteins0.003377Inherited
Class II aaRS and biotin synthetases0.03152Inherited
L30e-like0.03342Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.03342Inherited
POZ domain0.03955Inherited
SNARE-like0.07059Inherited
Nucleic acid-binding proteins0.0793Inherited
Nucleotidylyl transferase0.1105Inherited
Ribosomal protein S5 domain 2-like0.1355Inherited
Histone-fold0.9868Inherited
Protein kinase-like (PK-like)1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000001342Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000000116Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000004584Direct
Anticodon-binding domain0.000005503Direct
Translational machinery components0.00001063Direct
F1F0 ATP synthase subunit C0.00002586Direct
Cold shock DNA-binding domain-like0.00004284Direct
Elongation factors0.00009522Direct
Clathrin adaptor core protein0.0001618Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.000526Direct
Nitrogenase iron protein-like0.00125Inherited
BTB/POZ domain0.01586Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.03329Inherited
RecA protein-like (ATPase-domain)0.03361Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.03361Inherited
L30e/L7ae ribosomal proteins0.07002Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.07002Inherited
Nucleosome core histones0.9722Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
GroEL equatorial domain-like0.00000000002329Direct
GroEL-intermediate domain like0.00000000002329Direct
GroEL apical domain-like0.0000000001127Direct
Translation proteins SH3-like domain0.00000005689Direct
S15/NS1 RNA-binding domain0.00001236Direct
F1F0 ATP synthase subunit C0.00001236Direct
Ribosomal proteins S24e, L23 and L15e0.00001236Direct
Translation proteins0.00002193Direct
Translational machinery components0.00003524Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0002576Direct
Sm-like ribonucleoproteins0.002863Inherited
Class II aaRS and biotin synthetases0.02769Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02939Inherited
L30e-like0.02939Inherited
POZ domain0.03494Inherited
SNARE-like0.06312Inherited
Nucleic acid-binding proteins0.07117Inherited
Nucleotidylyl transferase0.1001Inherited
Ribosomal protein S5 domain 2-like0.1235Inherited
Histone-fold0.9757Inherited
Protein kinase-like (PK-like)1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002329Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000000002329Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000002619Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00001236Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.00002217Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002576Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.06312Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.06312Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.06312Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002329Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002576Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)