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Worm Phenotype (WP): pachytene progression during oogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <5>
+ + + + + + 6:   organism development variant [WBPhenotype:0000531] <10>(505|584) (505|253|70)
+ + + + + + 6:   development variant [WBPhenotype:0000518] <7>(511|586) (511|253|70)
+ + + + + 5:   lethal [WBPhenotype:0000062] <5>(504|583) (504|253|70)
+ + + + + 5:   cell development variant [WBPhenotype:0000529] <16>(125|123) (125|48|16)
+ + + + + 5:   embryonic development variant [WBPhenotype:0000749] <23>(464|553) (464|243|67)
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ + + + 4:   germ cell differentiation variant [WBPhenotype:0000894] <3>(35|39) (35|15|2)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <26>(152|155) (154|66|17)
+ + + + 4:   gametogenesis variant [WBPhenotype:0000774] <2>(64|59) (64|26|6)
+ + + + 4:   embryonic lethal [WBPhenotype:0000050] <7>(463|553) (463|243|67)
+ + + + 4:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|155) (154|66|17)
+ + + 3:   germ cell development variant [WBPhenotype:0000812] <8>(62|59) (62|26|6)
+ + + 3:   early embryonic lethal [WBPhenotype:0001100] <30>(61|62) (61|26|4)
+ + + 3:   oogenesis variant [WBPhenotype:0000186] <5>(31|33) (31|14|2)
+ + + 3:   cell division variant [WBPhenotype:0000746] <20>(55|56) (55|24|4)
+ + 2:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ + 2:   meiosis variant [WBPhenotype:0000775] <11>(37|33) (37|16|4)
+ + 2:   meiosis defective early emb [WBPhenotype:0001041] <11>(37|33) (37|16|4)
+ 1:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
0:   pachytene progression during oogenesis variant [WBPhenotype:0001946] <2>(19|16) (19|7|2)
- 1:   pachytene arrested germline nuclei [WBPhenotype:0001797](1|1) (1|0|0)
- 1:   pachytene region organization variant [WBPhenotype:0001951](9|11) (9|4|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
GroEL-intermediate domain like0.000000000001919Direct
GroEL equatorial domain-like0.000000000001919Direct
GroEL apical domain-like0.000000000009351Direct
Translation proteins SH3-like domain0.000000006825Direct
Sm-like ribonucleoproteins0.00000000747Direct
Nucleic acid-binding proteins0.00000002494Direct
Class II aaRS and biotin synthetases0.0000005429Direct
L30e-like0.000002137Direct
Translation proteins0.000002959Direct
S15/NS1 RNA-binding domain0.000004041Direct
Ribosomal proteins S24e, L23 and L15e0.000004041Direct
POZ domain0.000004311Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000007355Direct
Translational machinery components0.0000116Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00008714Direct
Ribosomal protein S5 domain 2-like0.000507Direct
Nucleotidylyl transferase0.0008062Direct
Protein kinase-like (PK-like)1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000000000001063Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000000009279Direct
BTB/POZ domain0.00000000005303Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00000005373Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0000008531Direct
Anticodon-binding domain0.000001601Direct
Translational machinery components0.000002316Direct
Cold shock DNA-binding domain-like0.000005629Direct
L30e/L7ae ribosomal proteins0.000007615Direct
Elongation factors0.00001659Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001628Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0002511Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002609Direct
Protein kinases, catalytic subunit1Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
GroEL equatorial domain-like0.000000000001499Direct
GroEL-intermediate domain like0.000000000001499Direct
GroEL apical domain-like0.000000000007321Direct
Translation proteins SH3-like domain0.0000000054Direct
Sm-like ribonucleoproteins0.000000005913Direct
Nucleic acid-binding proteins0.00000001979Direct
Class II aaRS and biotin synthetases0.0000004343Direct
L30e-like0.000001719Direct
Translation proteins0.000002384Direct
S15/NS1 RNA-binding domain0.000003258Direct
Ribosomal proteins S24e, L23 and L15e0.000003258Direct
POZ domain0.000003477Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000005937Direct
Translational machinery components0.00000938Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00007096Direct
Ribosomal protein S5 domain 2-like0.0004171Direct
Nucleotidylyl transferase0.0006656Direct
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000000001499Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000000001499Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.000003203Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.000003258Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00002108Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00007096Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000000001499Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00007096Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)