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Worm Phenotype (WP): pachytene progression during oogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + + 9:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + + 4:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)
+ + + + 4:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ + + 3:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
+ + + 3:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
+ + + 3:   cell cycle variant [WBPhenotype:0000740] <6>(35|35) (35|17|4)
+ + + 3:   oogenesis variant [WBPhenotype:0000186] <5>(33|34) (33|14|2)
+ + 2:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ + 2:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
+ 1:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
0:   pachytene progression during oogenesis variant [WBPhenotype:0001946] <2>(19|16) (19|7|2)
- 1:   pachytene arrested germline nuclei [WBPhenotype:0001797](1|1) (1|0|0)
- 1:   pachytene region organization variant [WBPhenotype:0001951](9|11) (9|4|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
GroEL equatorial domain-like0.000000000002187Direct
GroEL-intermediate domain like0.000000000002187Direct
GroEL apical domain-like0.00000000001067Direct
Translation proteins SH3-like domain0.000000007627Direct
Sm-like ribonucleoproteins0.000000008499Direct
Nucleic acid-binding proteins0.00000003028Direct
Class II aaRS and biotin synthetases0.000000604Direct
L30e-like0.000002293Direct
Translation proteins0.000003282Direct
Ribosomal proteins S24e, L23 and L15e0.000004254Direct
S15/NS1 RNA-binding domain0.000004254Direct
POZ domain0.000004623Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00000787Direct
Translational machinery components0.00001221Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00009164Direct
Ribosomal protein S5 domain 2-like0.0004749Direct
Nucleotidylyl transferase0.0007217Direct
Protein kinase-like (PK-like)1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000000000001125Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000000000982Direct
BTB/POZ domain0.00000000007791Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00000005613Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000000891Direct
Anticodon-binding domain0.000001623Direct
Translational machinery components0.000002374Direct
Cold shock DNA-binding domain-like0.000005864Direct
L30e/L7ae ribosomal proteins0.000007712Direct
Elongation factors0.00001711Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001645Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0002563Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002637Direct
Protein kinases, catalytic subunit1Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
GroEL-intermediate domain like0.000000000001724Direct
GroEL equatorial domain-like0.000000000001724Direct
GroEL apical domain-like0.000000000008419Direct
Translation proteins SH3-like domain0.00000000608Direct
Sm-like ribonucleoproteins0.000000006775Direct
Nucleic acid-binding proteins0.0000000242Direct
Class II aaRS and biotin synthetases0.0000004872Direct
L30e-like0.000001859Direct
Translation proteins0.000002665Direct
S15/NS1 RNA-binding domain0.000003456Direct
Ribosomal proteins S24e, L23 and L15e0.000003456Direct
POZ domain0.000003757Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000006401Direct
Translational machinery components0.000009935Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00007506Direct
Ribosomal protein S5 domain 2-like0.0003928Direct
Nucleotidylyl transferase0.0005992Direct
Protein kinase-like (PK-like)1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000000001724Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000000001724Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.000003456Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.000003519Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00002233Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00007506Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000000001724Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00007506Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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