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Worm Phenotype (WP): pachytene region organization variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   organism development variant [WBPhenotype:0000531] <10>(506|581) (506|247|69)
+ + + + + + + 7:   development variant [WBPhenotype:0000518] <7>(508|582) (508|247|69)
+ + + + + + 6:   cell development variant [WBPhenotype:0000529] <17>(128|124) (128|49|15)
+ + + + + + 6:   embryonic development variant [WBPhenotype:0000749] <21>(447|536) (447|232|64)
+ + + + + + 6:   lethal [WBPhenotype:0000062] <5>(500|579) (500|246|69)
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ + + + + 5:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|67|17)
+ + + + + 5:   germ cell differentiation variant [WBPhenotype:0000894] <3>(36|39) (36|15|2)
+ + + + + 5:   embryonic lethal [WBPhenotype:0000050] <7>(445|536) (445|231|64)
+ + + + + 5:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (65|26|6)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|67|17)
+ + + + 4:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(441|523) (441|229|64)
+ + + + 4:   cell division variant [WBPhenotype:0000746] <20>(55|57) (55|24|4)
+ + + + 4:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (63|26|6)
+ + + + 4:   oogenesis variant [WBPhenotype:0000186] <5>(32|33) (32|14|2)
+ + + 3:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ + + 3:   meiosis defective early emb [WBPhenotype:0001041] <11>(38|34) (38|16|4)
+ + + 3:   meiosis variant [WBPhenotype:0000775] <11>(38|34) (38|16|4)
+ + + 3:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|47|16)
+ + 2:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
+ + 2:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (51|17|6)
+ 1:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
+ 1:   pachytene progression during oogenesis variant [WBPhenotype:0001946] <2>(19|16) (19|7|2)
0:   pachytene region organization variant [WBPhenotype:0001951](9|11) (9|4|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Translation proteins SH3-like domain0.00000000318Direct
L30e-like0.000001236Direct
S15/NS1 RNA-binding domain0.000002579Direct
Ribosomal proteins S24e, L23 and L15e0.000002579Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000004274Direct
Translational machinery components0.000007448Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0000564Direct
Sm-like ribonucleoproteins0.0002934Direct
Translation proteins0.0008809Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00000002267Direct
Anticodon-binding domain0.0000009602Direct
Translational machinery components0.000001244Direct
L30e/L7ae ribosomal proteins0.00000458Direct
Elongation factors0.000008125Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00009955Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0001604Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002866Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0002866Direct
Cold shock DNA-binding domain-like0.0008449Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Translation proteins SH3-like domain0.000000002548Direct
L30e-like0.000001006Direct
S15/NS1 RNA-binding domain0.000002106Direct
Ribosomal proteins S24e, L23 and L15e0.000002106Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000003494Direct
Translational machinery components0.000006089Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00004647Direct
Sm-like ribonucleoproteins0.0002431Direct
Translation proteins0.0007373Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.000001712Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.000002106Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00001372Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00004647Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00004647Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)