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Worm Phenotype (WP): meiotic chromosome organization variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + 3:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ + 2:   cell cycle variant [WBPhenotype:0000740] <6>(35|35) (35|17|4)
+ + 2:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
+ + 2:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
+ 1:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
0:   meiotic chromosome organization variant [WBPhenotype:0002012] <11>(16|14) (16|4|1)
- 1:   chromosome disjunction defective [WBPhenotype:0001174] <3>(6|4) (6|1|0)
- 1:   crossover variant [WBPhenotype:0002083] <3>(0|0) (0|0|0)
- 1:   chromosome condensation variant [WBPhenotype:0001361] <1>(7|8) (7|3|1)
- 1:   chromosome decondensation variant [WBPhenotype:0002061] <1>(0|0) (0|0|0)
- 1:   crossover defective [WBPhenotype:0001814](0|0) (0|0|0)
- 1:   desynapsis defective [WBPhenotype:0001815](0|0) (0|0|0)
- 1:   meiotic chromatin reorganization variant [WBPhenotype:0001967](0|0) (0|0|0)
- 1:   synapsis defective [WBPhenotype:0001813](1|1) (1|0|0)
- 1:   synapsis formation variant [WBPhenotype:0002113](0|0) (0|0|0)
- 1:   synapsis maintenance defective [WBPhenotype:0002112](0|0) (0|0|0)
- 1:   univalent meiotic chromosomes [WBPhenotype:0002013](2|2) (2|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
LEM domain0Direct
Skp1 dimerisation domain-like0Direct
The spindle assembly checkpoint protein mad20Direct
Histone-fold0.0000000000013Direct
F1F0 ATP synthase subunit C0.00001641Direct
Activating enzymes of the ubiquitin-like proteins0.0001967Direct
POZ domain0.01262Inherited
SNARE-like0.1447Inherited
Smc hinge domain0.3531Inherited
P-loop containing nucleoside triphosphate hydrolases0.3956Inherited
Protein kinase-like (PK-like)0.5958Inherited
GroEL-intermediate domain like0.7226Inherited
GroEL equatorial domain-like0.7226Inherited
GroEL apical domain-like0.7226Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.7507Inherited
"Winged helix" DNA-binding domain0.7669Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
LEM domain0Direct
Skp1 dimerisation domain-like0Direct
Nucleosome core histones0.0000000000007107Direct
F1F0 ATP synthase subunit C0.00002337Direct
BTB/POZ domain0.0004452Direct
Nitrogenase iron protein-like0.001136Inherited
Smc hinge domain0.1285Inherited
Motor proteins0.1715Inherited
RecA protein-like (ATPase-domain)0.3283Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.5311Inherited
Proteasome subunits0.6218Inherited
Protein kinases, catalytic subunit0.6939Inherited
Group II chaperonin (CCT, TRIC), apical domain0.6993Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.6993Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
LEM domain0Direct
Skp1 dimerisation domain-like0Direct
The spindle assembly checkpoint protein mad20Direct
Histone-fold0.000000000001025Direct
F1F0 ATP synthase subunit C0.00001337Direct
Activating enzymes of the ubiquitin-like proteins0.0001615Direct
POZ domain0.0109Inherited
SNARE-like0.1319Inherited
Smc hinge domain0.333Inherited
P-loop containing nucleoside triphosphate hydrolases0.3751Inherited
Protein kinase-like (PK-like)0.5739Inherited
GroEL equatorial domain-like0.7021Inherited
GroEL apical domain-like0.7021Inherited
GroEL-intermediate domain like0.7021Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.7311Inherited
"Winged helix" DNA-binding domain0.7478Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000002842Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.7021Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.7021Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.7021Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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