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Worm Phenotype (WP): basement membrane remodeling variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ 1:   pericellular component development variant [WBPhenotype:0000200] <4>(31|39) (31|15|5)
0:   basement membrane remodeling variant [WBPhenotype:0002065] <1>(25|35) (25|15|5)
- 1:   basement membrane gap expansion variant [WBPhenotype:0002066](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
BPTI-like0Direct
Blood coagulation inhibitor (disintegrin)0Direct
Zn-dependent exopeptidases0Direct
PGBD-like0Direct
Carboxypeptidase regulatory domain-like0Direct
Acid proteases8.972e-16Direct
Cysteine proteinases0.000000000000005821Direct
alpha/beta-Hydrolases0.00000000000003216Direct
Protease propeptides/inhibitors0.000000000001058Direct
Creatinase/aminopeptidase0.00000000003315Direct
Trypsin-like serine proteases0.0000000001914Direct
TSP-1 type 1 repeat0.00000001334Direct
Bacterial exopeptidase dimerisation domain0.00000004279Direct
Subtilisin-like0.00000004279Direct
Serine protease inhibitors0.00000004304Direct
Metalloproteases ("zincins"), catalytic domain0.00000006089Direct
Hemopexin-like domain0.0000002455Direct
Spermadhesin, CUB domain0.0000005036Direct
LuxS/MPP-like metallohydrolase0.0000008527Direct
Integrin domains0.000001567Direct
Serpins0.000004186Direct
Thyroglobulin type-1 domain0.0000212Direct
beta-lactamase/transpeptidase-like0.00002572Direct
Leukotriene A4 hydrolase N-terminal domain0.0001238Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0002099Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Matrix metalloproteases, catalytic domain0Direct
DPP6 catalytic domain-like0Direct
Blood coagulation inhibitor (disintegrin)0Direct
DPP6 N-terminal domain-like0Direct
Acylamino-acid-releasing enzyme, C-terminal donain0Direct
Astacin0Direct
Carboxypeptidase regulatory domain0Direct
Neutral endopeptidase (neprilysin)0Direct
Proprotein convertase P-domain0Direct
Methionine aminopeptidase, insert domain0Direct
Small Kunitz-type inhibitors & BPTI-like toxins0Direct
Papain-like0Direct
Integrin domains0Direct
Pepsin-like6.263e-16Direct
Pancreatic carboxypeptidases0.0000000000003192Direct
Reprolysin-like0.000000000004529Direct
Bacterial dinuclear zinc exopeptidases0.00000000003936Direct
Creatinase/aminopeptidase0.0000000001899Direct
Serine carboxypeptidase-like0.000000001028Direct
TSP-1 type 1 repeat0.0000001126Direct
Subtilases0.0000001134Direct
Bacterial exopeptidase dimerisation domain0.0000001134Direct
Hemopexin-like domain0.0000006487Direct
Pancreatic carboxypeptidase, activation domain0.000002166Direct
MPP-like0.000002831Direct
Eukaryotic proteases0.000005517Direct
Serpins0.000008496Direct
beta-Lactamase/D-ala carboxypeptidase0.00001187Direct
ATI-like0.00001187Direct
Spermadhesin, CUB domain0.00001842Direct
Thyroglobulin type-1 domain0.00004337Direct
Gamma-glutamyltranspeptidase-like0.00004337Direct
Acetylcholinesterase-like0.0001114Direct
Leukotriene A4 hydrolase N-terminal domain0.0005046Direct
Leukotriene A4 hydrolase catalytic domain0.0005046Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-dependent exopeptidases0Direct
PGBD-like0Direct
BPTI-like0Direct
Carboxypeptidase regulatory domain-like0Direct
Blood coagulation inhibitor (disintegrin)0Direct
Acid proteases7.031e-16Direct
Cysteine proteinases0.000000000000004563Direct
alpha/beta-Hydrolases0.00000000000002524Direct
Protease propeptides/inhibitors0.0000000000008332Direct
Creatinase/aminopeptidase0.0000000000262Direct
Trypsin-like serine proteases0.0000000001516Direct
TSP-1 type 1 repeat0.00000001064Direct
Bacterial exopeptidase dimerisation domain0.00000003423Direct
Subtilisin-like0.00000003423Direct
Serine protease inhibitors0.00000003443Direct
Metalloproteases ("zincins"), catalytic domain0.00000004874Direct
Hemopexin-like domain0.0000001974Direct
Spermadhesin, CUB domain0.0000004058Direct
LuxS/MPP-like metallohydrolase0.0000006886Direct
Integrin domains0.000001268Direct
Serpins0.000003401Direct
Thyroglobulin type-1 domain0.00001728Direct
beta-lactamase/transpeptidase-like0.00002099Direct
Leukotriene A4 hydrolase N-terminal domain0.0001015Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0001725Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55486,49854
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 49854 - Spermadhesin, CUB domain
  • 0Direct
    55486,50923
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0Direct
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0Direct
    53187,49464
  • 53187 - Zn-dependent exopeptidases
  • 49464 - Carboxypeptidase regulatory domain-like
  • 0Direct
    55920,46785
  • 55920 - Creatinase/aminopeptidase
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    47090,55486
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 0Direct
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0Direct
    55486,57552
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 57552 - Blood coagulation inhibitor (disintegrin)
  • 0Direct
    57362,57362
  • 57362 - BPTI-like
  • 57362 - BPTI-like
  • 0.00000000000001613Direct
    82171,53474
  • 82171 - DPP6 N-terminal domain-like
  • 53474 - alpha/beta-Hydrolases
  • 0.0000000009032Direct
    82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.000000002596Direct
    54897,53187
  • 54897 - Protease propeptides/inhibitors
  • 53187 - Zn-dependent exopeptidases
  • 0.00000002372Direct
    53187,55031
  • 53187 - Zn-dependent exopeptidases
  • 55031 - Bacterial exopeptidase dimerisation domain
  • 0.00000003423Direct
    63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0.0000006886Direct
    63737,55486
  • 63737 - Leukotriene A4 hydrolase N-terminal domain
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 0.00004973Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57362,57362,57362
  • 57362 - BPTI-like
  • 57362 - BPTI-like
  • 57362 - BPTI-like
  • 0Direct
    47090,55486,50923
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0Direct
    54897,52743,49785
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0Direct
    82895,82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.000000002596Direct
    63411,63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0.000006031Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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