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Worm Phenotype (WP): cell type morphology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|64)
+ 1:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|54|17)
0:   cell type morphology variant [WBPhenotype:0002108] <12>(77|76) (79|44|15)
- 1:   epithelial cell morphology variant [WBPhenotype:0000899] <5>(6|3) (6|1|1)
- 1:   neuron morphology variant [WBPhenotype:0000905] <5>(13|8) (14|5|2)
- 1:   germ cell morphology variant [WBPhenotype:0000900] <4>(44|41) (45|22|8)
- 1:   muscle cell morphology variant [WBPhenotype:0000904] <4>(23|27) (23|16|6)
- 1:   embryonic cell morphology variant [WBPhenotype:0000770] <2>(3|4) (3|2|0)
- 1:   germline precursor cell morphology variant [WBPhenotype:0002485] <1>(0|0) (0|0|0)
- 1:   gland cell morphology variant [WBPhenotype:0000901] <1>(0|0) (0|0|0)
- 1:   intestinal cell morphology variant [WBPhenotype:0000902] <1>(0|0) (0|0|0)
- 1:   blast cell morphology variant [WBPhenotype:0000898](0|0) (0|0|0)
- 1:   distal tip cell morphology variant [WBPhenotype:0000196](0|0) (0|0|0)
- 1:   linker cell morphology variant [WBPhenotype:0002139](0|0) (0|0|0)
- 1:   uterine vulval cell morphology variant [WBPhenotype:0000906](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Integrin domains0Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Integrin alpha N-terminal domain0Direct
Sm-like ribonucleoproteins0.00000001435Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00003749Direct
Spectrin repeat0.00007652Direct
Cysteine-rich domain0.00007686Direct
P-loop containing nucleoside triphosphate hydrolases0.0001766Direct
Translation proteins SH3-like domain0.000193Direct
Ribosomal proteins S24e, L23 and L15e0.0002129Direct
Calpain large subunit, middle domain (domain III)0.0006363Direct
Class II aaRS ABD-related0.0006363Direct
Metal cation-transporting ATPase, ATP-binding domain N0.001003Inherited
Annexin0.001321Inherited
ADC-like0.001321Inherited
Cdc48 domain 2-like0.001321Inherited
beta-sandwich domain of Sec23/240.001321Inherited
Calcium ATPase, transmembrane domain M0.001556Inherited
CCCH zinc finger0.002489Inherited
Zn-binding ribosomal proteins0.002989Inherited
PLC-like phosphodiesterases0.003018Inherited
Calcium ATPase, transduction domain A0.003088Inherited
Nucleic acid-binding proteins0.004912Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.004912Inherited
S15/NS1 RNA-binding domain0.005301Inherited
F1F0 ATP synthase subunit C0.005301Inherited
PYP-like sensor domain (PAS domain)0.006584Inherited
Myosin rod fragments0.01234Inherited
L30e-like0.01234Inherited
Translational machinery components0.01301Inherited
SH2 domain0.01339Inherited
Calponin-homology domain, CH-domain0.01339Inherited
Second domain of FERM0.01719Inherited
ACP-like0.02519Inherited
Fibronectin type III0.04183Inherited
SH3-domain0.04765Inherited
RNA-binding domain, RBD0.04909Inherited
SMAD/FHA domain0.08258Inherited
PH domain-like0.0946Inherited
Ribosomal protein S5 domain 2-like0.09557Inherited
Class II aaRS and biotin synthetases0.09557Inherited
Protein kinase-like (PK-like)0.1146Inherited
Concanavalin A-like lectins/glucanases0.1149Inherited
Actin-like ATPase domain0.1149Inherited
Immunoglobulin0.1316Inherited
GTPase activation domain, GAP0.1923Inherited
DBL homology domain (DH-domain)0.1947Inherited
dsRNA-binding domain-like0.2449Inherited
HAD-like0.2615Inherited
ARM repeat0.2974Inherited
EF-hand0.3058Inherited
EGF/Laminin0.3069Inherited
Sec1/munc18-like (SM) proteins0.3077Inherited
Troponin coil-coiled subunits0.3077Inherited
Activating enzymes of the ubiquitin-like proteins0.3852Inherited
Translation proteins0.4034Inherited
GroEL apical domain-like0.4034Inherited
Cyclin-like0.4704Inherited
GroEL equatorial domain-like0.4704Inherited
GroEL-intermediate domain like0.4704Inherited
RBP11-like subunits of RNA polymerase0.4787Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.4787Inherited
TPR-like0.4901Inherited
Glutathione synthetase ATP-binding domain-like0.6248Inherited
Growth factor receptor domain0.6431Inherited
Voltage-gated potassium channels0.7094Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.7139Inherited
Tubulin C-terminal domain-like0.7722Inherited
Tubulin nucleotide-binding domain-like0.8291Inherited
Tropomyosin0.8497Inherited
PDZ domain-like0.9164Inherited
L domain-like1Inherited


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Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
Integrin domains0Direct
Helical domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Anticodon-binding domain of Class II aaRS0Direct
Mammalian PLC0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
POU-specific domain0Direct
Inositol polyphosphate 5-phosphatase (IPP5)0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.0000001509Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000007229Direct
Clathrin coat assembly domain0.00001296Direct
Spectrin repeat0.00007037Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00007076Direct
Laminin-type module0.00007076Direct
PLC-like (P variant)0.0002107Direct
EF-hand modules in multidomain proteins0.0003806Direct
Calpain large subunit, middle domain (domain III)0.001289Inherited
First domain of FERM0.001828Inherited
Cdc48 N-terminal domain-like0.002018Inherited
Anticodon-binding domain0.002018Inherited
Troponin I0.002018Inherited
Cdc48 domain 2-like0.002018Inherited
Annexin0.002018Inherited
Lamin A/C globular tail domain0.003157Inherited
Third domain of FERM0.006456Inherited
CCCH zinc finger0.007978Inherited
L30e/L7ae ribosomal proteins0.008056Inherited
F1F0 ATP synthase subunit C0.008056Inherited
Calcium ATPase, transduction domain A0.008176Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.0113Inherited
Translational machinery components0.0113Inherited
Nitrogenase iron protein-like0.01169Inherited
Laminin G-like module0.01169Inherited
Canonical RBD0.01205Inherited
Calponin-homology domain, CH-domain0.0125Inherited
Motor proteins0.01709Inherited
Myosin rod fragments0.02093Inherited
SH2 domain0.02257Inherited
Cold shock DNA-binding domain-like0.0226Inherited
Second domain of FERM0.02481Inherited
Actin/HSP700.03373Inherited
BCR-homology GTPase activation domain (BH-domain)0.03373Inherited
Fibronectin type III0.0401Inherited
G proteins0.04068Inherited
Calpain large subunit, catalytic domain (domain II)0.04318Inherited
SH3-domain0.04673Inherited
Pleckstrin-homology domain (PH domain)0.04936Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.08933Inherited
FHA domain0.1016Inherited
Protein kinases, catalytic subunit0.1413Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1443Inherited
DBL homology domain (DH-domain)0.1835Inherited
LIM domain0.1835Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1835Inherited
I set domains0.1953Inherited
Synaptotagmin-like (S variant)0.2324Inherited
Cyclin0.2324Inherited
Elongation factors0.2929Inherited
Sec1/munc18-like (SM) proteins0.2929Inherited
Extended AAA-ATPase domain0.2968Inherited
RecA protein-like (ATPase-domain)0.3702Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.461Inherited
Pumilio repeat0.5343Inherited
Clathrin adaptor core protein0.7011Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.7914Inherited
Tubulin, GTPase domain0.8219Inherited
Tropomyosin0.8403Inherited
Growth factor receptor domain0.9027Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.9027Inherited
PDZ domain0.9245Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Integrin alpha N-terminal domain0Direct
Integrin domains0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Sm-like ribonucleoproteins0.00000001144Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00003061Direct
Spectrin repeat0.00006257Direct
Cysteine-rich domain0.00006286Direct
P-loop containing nucleoside triphosphate hydrolases0.0001449Direct
Translation proteins SH3-like domain0.0001584Direct
Ribosomal proteins S24e, L23 and L15e0.0001749Direct
Class II aaRS ABD-related0.000527Direct
Calpain large subunit, middle domain (domain III)0.000527Direct
Metal cation-transporting ATPase, ATP-binding domain N0.0008343Direct
Actin depolymerizing proteins0.0008643Direct
Cdc48 domain 2-like0.001102Inherited
beta-sandwich domain of Sec23/240.001102Inherited
Annexin0.001102Inherited
ADC-like0.001102Inherited
Calcium ATPase, transmembrane domain M0.0013Inherited
CCCH zinc finger0.002094Inherited
Zn-binding ribosomal proteins0.002521Inherited
PLC-like phosphodiesterases0.002546Inherited
Calcium ATPase, transduction domain A0.002605Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.004171Inherited
Nucleic acid-binding proteins0.004171Inherited
F1F0 ATP synthase subunit C0.004505Inherited
S15/NS1 RNA-binding domain0.004505Inherited
PYP-like sensor domain (PAS domain)0.005614Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.01064Inherited
Myosin rod fragments0.01064Inherited
L30e-like0.01064Inherited
Translational machinery components0.01123Inherited
SH2 domain0.01158Inherited
Calponin-homology domain, CH-domain0.01158Inherited
Second domain of FERM0.01491Inherited
ACP-like0.02201Inherited
Fibronectin type III0.0369Inherited
SH3-domain0.04216Inherited
RNA-binding domain, RBD0.04347Inherited
SMAD/FHA domain0.07415Inherited
PH domain-like0.08528Inherited
Class II aaRS and biotin synthetases0.08618Inherited
Ribosomal protein S5 domain 2-like0.08618Inherited
Protein kinase-like (PK-like)0.1039Inherited
Concanavalin A-like lectins/glucanases0.1041Inherited
Actin-like ATPase domain0.1041Inherited
Immunoglobulin0.1197Inherited
GTPase activation domain, GAP0.1769Inherited
DBL homology domain (DH-domain)0.1791Inherited
dsRNA-binding domain-like0.2273Inherited
HAD-like0.2435Inherited
ARM repeat0.2784Inherited
EF-hand0.2865Inherited
EGF/Laminin0.2876Inherited
Sec1/munc18-like (SM) proteins0.2884Inherited
Troponin coil-coiled subunits0.2884Inherited
Activating enzymes of the ubiquitin-like proteins0.3646Inherited
GroEL apical domain-like0.3828Inherited
Translation proteins0.3828Inherited
Cyclin-like0.4492Inherited
GroEL equatorial domain-like0.4492Inherited
GroEL-intermediate domain like0.4492Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.4573Inherited
RBP11-like subunits of RNA polymerase0.4573Inherited
TPR-like0.4685Inherited
Glutathione synthetase ATP-binding domain-like0.6029Inherited
Growth factor receptor domain0.6214Inherited
Voltage-gated potassium channels0.6887Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.6933Inherited
Tubulin C-terminal domain-like0.7532Inherited
Tubulin nucleotide-binding domain-like0.8113Inherited
Tropomyosin0.8327Inherited
PDZ domain-like0.9015Inherited
L domain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56112,48371
  • 56112 - Protein kinase-like (PK-like)
  • 48371 - ARM repeat
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.000004187Direct
    54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.0001581Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.0001581Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0001581Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.0008343Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.001102Inherited
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.001102Inherited
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.001102Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.002521Inherited
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.002546Inherited
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.004505Inherited
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.005614Inherited
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.01064Inherited
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.0138Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.02201Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.02201Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.0529Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.06743Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.1041Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.1103Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.1769Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.187Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.187Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.2273Inherited
    50978,50978
  • 50978 - WD40 repeat-like
  • 50978 - WD40 repeat-like
  • 0.2273Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.2884Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.2884Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.3226Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.3646Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.4492Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4492Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.4573Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.8113Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,49265,48726
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0Direct
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000009605Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00002021Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.002605Inherited
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.005614Inherited
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.008783Inherited
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.01064Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.2273Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.3295Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4492Inherited
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.4573Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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