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Worm Phenotype (WP): cell type morphology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ 1:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
0:   cell type morphology variant [WBPhenotype:0002108] <12>(77|76) (79|45|15)
- 1:   epithelial cell morphology variant [WBPhenotype:0000899] <5>(6|3) (6|1|1)
- 1:   neuron morphology variant [WBPhenotype:0000905] <5>(13|8) (14|5|2)
- 1:   germ cell morphology variant [WBPhenotype:0000900] <4>(44|41) (45|23|8)
- 1:   muscle cell morphology variant [WBPhenotype:0000904] <4>(23|27) (23|16|6)
- 1:   embryonic cell morphology variant [WBPhenotype:0000770] <2>(3|4) (3|2|0)
- 1:   germline precursor cell morphology variant [WBPhenotype:0002485] <1>(0|0) (0|0|0)
- 1:   gland cell morphology variant [WBPhenotype:0000901] <1>(0|0) (0|0|0)
- 1:   intestinal cell morphology variant [WBPhenotype:0000902] <1>(0|0) (0|0|0)
- 1:   blast cell morphology variant [WBPhenotype:0000898](0|0) (0|0|0)
- 1:   distal tip cell morphology variant [WBPhenotype:0000196](0|0) (0|0|0)
- 1:   linker cell morphology variant [WBPhenotype:0002139](0|0) (0|0|0)
- 1:   uterine vulval cell morphology variant [WBPhenotype:0000906](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin domains0Direct
Sm-like ribonucleoproteins0.00000001453Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00003787Direct
Spectrin repeat0.00007699Direct
Cysteine-rich domain0.00007764Direct
P-loop containing nucleoside triphosphate hydrolases0.0001739Direct
Translation proteins SH3-like domain0.0001942Direct
Ribosomal proteins S24e, L23 and L15e0.0002137Direct
Calpain large subunit, middle domain (domain III)0.0006393Direct
Class II aaRS ABD-related0.0006393Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00101Inherited
Annexin0.001326Inherited
ADC-like0.001326Inherited
Cdc48 domain 2-like0.001326Inherited
beta-sandwich domain of Sec23/240.001326Inherited
Calcium ATPase, transmembrane domain M0.001567Inherited
CCCH zinc finger0.002507Inherited
Zn-binding ribosomal proteins0.003001Inherited
PLC-like phosphodiesterases0.003034Inherited
Calcium ATPase, transduction domain A0.003107Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.004894Inherited
Nucleic acid-binding proteins0.004894Inherited
F1F0 ATP synthase subunit C0.005316Inherited
S15/NS1 RNA-binding domain0.005316Inherited
PYP-like sensor domain (PAS domain)0.00661Inherited
Myosin rod fragments0.01238Inherited
L30e-like0.01238Inherited
Translational machinery components0.01305Inherited
Calponin-homology domain, CH-domain0.01336Inherited
SH2 domain0.01336Inherited
Second domain of FERM0.01726Inherited
ACP-like0.02525Inherited
Fibronectin type III0.04169Inherited
SH3-domain0.04749Inherited
RNA-binding domain, RBD0.05736Inherited
SMAD/FHA domain0.08285Inherited
PH domain-like0.09421Inherited
Ribosomal protein S5 domain 2-like0.09541Inherited
Class II aaRS and biotin synthetases0.09541Inherited
Protein kinase-like (PK-like)0.114Inherited
Concanavalin A-like lectins/glucanases0.1147Inherited
Actin-like ATPase domain0.1147Inherited
Immunoglobulin0.1313Inherited
GTPase activation domain, GAP0.1919Inherited
DBL homology domain (DH-domain)0.1945Inherited
dsRNA-binding domain-like0.2446Inherited
HAD-like0.261Inherited
ARM repeat0.2964Inherited
EF-hand0.3053Inherited
EGF/Laminin0.3065Inherited
Sec1/munc18-like (SM) proteins0.3076Inherited
Troponin coil-coiled subunits0.3076Inherited
Activating enzymes of the ubiquitin-like proteins0.3849Inherited
Translation proteins0.403Inherited
GroEL apical domain-like0.403Inherited
GroEL-intermediate domain like0.47Inherited
GroEL equatorial domain-like0.47Inherited
Cyclin-like0.47Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.4784Inherited
RBP11-like subunits of RNA polymerase0.4784Inherited
TPR-like0.4893Inherited
Glutathione synthetase ATP-binding domain-like0.6246Inherited
Growth factor receptor domain0.6426Inherited
Voltage-gated potassium channels0.711Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.7136Inherited
Tubulin C-terminal domain-like0.7717Inherited
Tubulin nucleotide-binding domain-like0.8286Inherited
Tropomyosin0.8491Inherited
PDZ domain-like0.9162Inherited
L domain-like1Inherited


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Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
POU-specific domain0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
beta-sandwich domain of Sec23/240Direct
Inositol polyphosphate 5-phosphatase (IPP5)0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Mammalian PLC0Direct
Trunk domain of Sec23/240Direct
Integrin domains0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Anticodon-binding domain of Class II aaRS0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Proteasome subunits0.000000152Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000007276Direct
Clathrin coat assembly domain0.00001302Direct
Spectrin repeat0.00007068Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00007101Direct
Laminin-type module0.00007101Direct
PLC-like (P variant)0.0002116Direct
EF-hand modules in multidomain proteins0.0003817Direct
Calpain large subunit, middle domain (domain III)0.001294Inherited
First domain of FERM0.001833Inherited
Cdc48 domain 2-like0.002022Inherited
Annexin0.002022Inherited
Anticodon-binding domain0.002022Inherited
Troponin I0.002022Inherited
Cdc48 N-terminal domain-like0.002022Inherited
Lamin A/C globular tail domain0.003167Inherited
Third domain of FERM0.006475Inherited
CCCH zinc finger0.008016Inherited
L30e/L7ae ribosomal proteins0.008074Inherited
F1F0 ATP synthase subunit C0.008074Inherited
Calcium ATPase, transduction domain A0.008208Inherited
Translational machinery components0.01133Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.01133Inherited
Nitrogenase iron protein-like0.01173Inherited
Laminin G-like module0.01173Inherited
Calponin-homology domain, CH-domain0.01246Inherited
Canonical RBD0.01465Inherited
Motor proteins0.01703Inherited
Myosin rod fragments0.02097Inherited
Cold shock DNA-binding domain-like0.02268Inherited
SH2 domain0.0227Inherited
Second domain of FERM0.02488Inherited
Actin/HSP700.03364Inherited
BCR-homology GTPase activation domain (BH-domain)0.03364Inherited
Fibronectin type III0.03995Inherited
G proteins0.04044Inherited
Calpain large subunit, catalytic domain (domain II)0.0433Inherited
SH3-domain0.04655Inherited
Pleckstrin-homology domain (PH domain)0.0492Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.08914Inherited
FHA domain0.1018Inherited
Protein kinases, catalytic subunit0.1404Inherited
Group II chaperonin (CCT, TRIC), apical domain0.144Inherited
DBL homology domain (DH-domain)0.1832Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1832Inherited
LIM domain0.1832Inherited
I set domains0.1949Inherited
Cyclin0.232Inherited
Synaptotagmin-like (S variant)0.232Inherited
Sec1/munc18-like (SM) proteins0.2926Inherited
Elongation factors0.2926Inherited
Extended AAA-ATPase domain0.2964Inherited
RecA protein-like (ATPase-domain)0.3699Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.4606Inherited
Pumilio repeat0.5338Inherited
Clathrin adaptor core protein0.7008Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.7911Inherited
Tubulin, GTPase domain0.8215Inherited
Tropomyosin0.8399Inherited
Growth factor receptor domain0.9024Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.9024Inherited
PDZ domain0.9241Inherited


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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal, gelsolin-like domain of Sec23/240Direct
Integrin domains0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Sm-like ribonucleoproteins0.00000001159Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00003094Direct
Spectrin repeat0.000063Direct
Cysteine-rich domain0.00006354Direct
P-loop containing nucleoside triphosphate hydrolases0.0001427Direct
Translation proteins SH3-like domain0.0001595Direct
Ribosomal proteins S24e, L23 and L15e0.0001757Direct
Class II aaRS ABD-related0.0005298Direct
Calpain large subunit, middle domain (domain III)0.0005298Direct
Metal cation-transporting ATPase, ATP-binding domain N0.0008407Direct
Actin depolymerizing proteins0.0008682Direct
Cdc48 domain 2-like0.001106Inherited
Annexin0.001106Inherited
beta-sandwich domain of Sec23/240.001106Inherited
ADC-like0.001106Inherited
Calcium ATPase, transmembrane domain M0.00131Inherited
CCCH zinc finger0.00211Inherited
Zn-binding ribosomal proteins0.002533Inherited
PLC-like phosphodiesterases0.002561Inherited
Calcium ATPase, transduction domain A0.002623Inherited
Nucleic acid-binding proteins0.004157Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.004157Inherited
F1F0 ATP synthase subunit C0.00452Inherited
S15/NS1 RNA-binding domain0.00452Inherited
PYP-like sensor domain (PAS domain)0.005637Inherited
L30e-like0.01069Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.01069Inherited
Myosin rod fragments0.01069Inherited
Translational machinery components0.01127Inherited
Calponin-homology domain, CH-domain0.01155Inherited
SH2 domain0.01155Inherited
Second domain of FERM0.01498Inherited
ACP-like0.02209Inherited
Fibronectin type III0.03678Inherited
SH3-domain0.04203Inherited
RNA-binding domain, RBD0.05101Inherited
SMAD/FHA domain0.07441Inherited
PH domain-like0.08492Inherited
Class II aaRS and biotin synthetases0.08604Inherited
Ribosomal protein S5 domain 2-like0.08604Inherited
Protein kinase-like (PK-like)0.1033Inherited
Concanavalin A-like lectins/glucanases0.1039Inherited
Actin-like ATPase domain0.1039Inherited
Immunoglobulin0.1194Inherited
GTPase activation domain, GAP0.1765Inherited
DBL homology domain (DH-domain)0.1789Inherited
dsRNA-binding domain-like0.227Inherited
HAD-like0.243Inherited
ARM repeat0.2774Inherited
EF-hand0.2861Inherited
EGF/Laminin0.2873Inherited
Troponin coil-coiled subunits0.2883Inherited
Sec1/munc18-like (SM) proteins0.2883Inherited
Activating enzymes of the ubiquitin-like proteins0.3644Inherited
GroEL apical domain-like0.3824Inherited
Translation proteins0.3824Inherited
GroEL equatorial domain-like0.4489Inherited
Cyclin-like0.4489Inherited
GroEL-intermediate domain like0.4489Inherited
RBP11-like subunits of RNA polymerase0.457Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.457Inherited
TPR-like0.4677Inherited
Glutathione synthetase ATP-binding domain-like0.6026Inherited
Growth factor receptor domain0.6208Inherited
Voltage-gated potassium channels0.6903Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.693Inherited
Tubulin C-terminal domain-like0.7527Inherited
Tubulin nucleotide-binding domain-like0.8108Inherited
Tropomyosin0.8321Inherited
PDZ domain-like0.9013Inherited
L domain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    56112,48371
  • 56112 - Protein kinase-like (PK-like)
  • 48371 - ARM repeat
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.000004215Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0001589Direct
    54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.0001589Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.0001589Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.0008407Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.001106Inherited
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.001106Inherited
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.001106Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.002533Inherited
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.002561Inherited
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00452Inherited
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.005637Inherited
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.01069Inherited
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.01386Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.02209Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.02209Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.04788Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.05311Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.06728Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.1039Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.1101Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.1765Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.1868Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1868Inherited
    50978,50978
  • 50978 - WD40 repeat-like
  • 50978 - WD40 repeat-like
  • 0.227Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.227Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.2883Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.2883Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.3222Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.3644Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.4489Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4489Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.457Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.8108Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0Direct
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,49265,48726
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000009691Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00002036Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.002623Inherited
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.005637Inherited
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.008825Inherited
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.01069Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.227Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.329Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4489Inherited
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.457Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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