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Worm Phenotype (WP): cell type morphology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   morphology variant [WBPhenotype:0000520] <9>(444|532) (446|238|67)
+ 1:   cell morphology variant [WBPhenotype:0000533] <9>(106|107) (110|55|17)
0:   cell type morphology variant [WBPhenotype:0002108] <12>(78|81) (82|45|15)
- 1:   embryonic cell morphology variant [WBPhenotype:0000770] <7>(6|8) (6|4|0)
- 1:   epithelial cell morphology variant [WBPhenotype:0000899] <5>(6|3) (6|1|1)
- 1:   neuron morphology variant [WBPhenotype:0000905] <5>(13|9) (14|5|2)
- 1:   germ cell morphology variant [WBPhenotype:0000900] <4>(43|41) (45|23|8)
- 1:   muscle cell morphology variant [WBPhenotype:0000904] <4>(23|27) (24|16|6)
- 1:   germline precursor cell morphology variant [WBPhenotype:0002485] <1>(0|0) (0|0|0)
- 1:   gland cell morphology variant [WBPhenotype:0000901] <1>(0|0) (0|0|0)
- 1:   intestinal cell morphology variant [WBPhenotype:0000902] <1>(0|0) (0|0|0)
- 1:   blast cell morphology variant [WBPhenotype:0000898](0|0) (0|0|0)
- 1:   distal tip cell morphology variant [WBPhenotype:0000196](0|0) (0|0|0)
- 1:   linker cell morphology variant [WBPhenotype:0002139](0|0) (0|0|0)
- 1:   uterine vulval cell morphology variant [WBPhenotype:0000906](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Integrin domains0Direct
Type II DNA topoisomerase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Sm-like ribonucleoproteins0.00000001282Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00003411Direct
Cysteine-rich domain0.00006964Direct
Spectrin repeat0.0000726Direct
Translation proteins SH3-like domain0.0001834Direct
Ribosomal proteins S24e, L23 and L15e0.0002074Direct
Class II aaRS ABD-related0.0006141Direct
Calpain large subunit, middle domain (domain III)0.0006141Direct
P-loop containing nucleoside triphosphate hydrolases0.0008101Direct
Metal cation-transporting ATPase, ATP-binding domain N0.0009417Direct
Annexin0.001296Inherited
beta-sandwich domain of Sec23/240.001296Inherited
ADC-like0.001296Inherited
Cdc48 domain 2-like0.001296Inherited
Calcium ATPase, transmembrane domain M0.001463Inherited
Zn-binding ribosomal proteins0.002904Inherited
Calcium ATPase, transduction domain A0.002923Inherited
PLC-like phosphodiesterases0.004868Inherited
F1F0 ATP synthase subunit C0.005201Inherited
S15/NS1 RNA-binding domain0.005201Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005205Inherited
L30e-like0.012Inherited
Myosin rod fragments0.012Inherited
Translational machinery components0.01275Inherited
SH2 domain0.01408Inherited
Calponin-homology domain, CH-domain0.01408Inherited
Second domain of FERM0.01661Inherited
Actin-like ATPase domain0.02304Inherited
Nucleic acid-binding proteins0.02863Inherited
Fibronectin type III0.0436Inherited
SH3-domain0.0499Inherited
Tubulin C-terminal domain-like0.06109Inherited
Tubulin nucleotide-binding domain-like0.07762Inherited
SMAD/FHA domain0.07989Inherited
DNA/RNA polymerases0.08248Inherited
CCCH zinc finger0.09828Inherited
Class II aaRS and biotin synthetases0.09828Inherited
PH domain-like0.09954Inherited
Concanavalin A-like lectins/glucanases0.1188Inherited
Ribosomal protein S5 domain 2-like0.1247Inherited
Immunoglobulin0.1364Inherited
EF-hand0.1585Inherited
Protein kinase-like (PK-like)0.1657Inherited
GTPase activation domain, GAP0.1983Inherited
Cyclin-like0.1992Inherited
DBL homology domain (DH-domain)0.1992Inherited
ARM repeat0.2429Inherited
Troponin coil-coiled subunits0.3132Inherited
Prefoldin0.3132Inherited
Sec1/munc18-like (SM) proteins0.3132Inherited
EGF/Laminin0.3149Inherited
RNA-binding domain, RBD0.3849Inherited
GroEL apical domain-like0.4117Inherited
Translation proteins0.4117Inherited
GroEL-intermediate domain like0.4797Inherited
GroEL equatorial domain-like0.4797Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.4862Inherited
RBP11-like subunits of RNA polymerase0.4862Inherited
HAD-like0.501Inherited
TPR-like0.6305Inherited
Glutathione synthetase ATP-binding domain-like0.636Inherited
Growth factor receptor domain0.6549Inherited
Voltage-gated potassium channels0.7002Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.7241Inherited
Activating enzymes of the ubiquitin-like proteins0.7241Inherited
PDZ domain-like0.8244Inherited
Tropomyosin0.8611Inherited
dsRNA-binding domain-like0.8611Inherited
L domain-like1Inherited


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Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
POU-specific domain0Direct
Trunk domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin domains0Direct
Type II DNA topoisomerase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Anticodon-binding domain of Class II aaRS0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Inositol polyphosphate 5-phosphatase (IPP5)0Direct
Mammalian PLC0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Zn-finger domain of Sec23/240Direct
Proteasome subunits0.0000001548Direct
Actin/HSP700.0000004006Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000007409Direct
Clathrin coat assembly domain0.00001333Direct
Spectrin repeat0.00007224Direct
Laminin-type module0.00007267Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00007267Direct
PLC-like (P variant)0.0002166Direct
EF-hand modules in multidomain proteins0.0003909Direct
Calpain large subunit, middle domain (domain III)0.00132Inherited
First domain of FERM0.001873Inherited
Troponin I0.002067Inherited
Cdc48 N-terminal domain-like0.002067Inherited
Cdc48 domain 2-like0.002067Inherited
Anticodon-binding domain0.002067Inherited
Annexin0.002067Inherited
Lamin A/C globular tail domain0.003233Inherited
Third domain of FERM0.006617Inherited
F1F0 ATP synthase subunit C0.008242Inherited
L30e/L7ae ribosomal proteins0.008242Inherited
Calcium ATPase, transduction domain A0.008354Inherited
Translational machinery components0.01156Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.01156Inherited
Laminin G-like module0.01195Inherited
Calponin-homology domain, CH-domain0.0136Inherited
Motor proteins0.01516Inherited
Myosin rod fragments0.02133Inherited
Second domain of FERM0.02524Inherited
SH2 domain0.02694Inherited
BCR-homology GTPase activation domain (BH-domain)0.03604Inherited
DNA polymerase I0.0385Inherited
WD40-repeat0.03994Inherited
Fibronectin type III0.04317Inherited
Calpain large subunit, catalytic domain (domain II)0.0439Inherited
G proteins0.04534Inherited
SH3-domain0.0506Inherited
Pleckstrin-homology domain (PH domain)0.05297Inherited
Tubulin, C-terminal domain0.05835Inherited
Tubulin, GTPase domain0.07414Inherited
CCCH zinc finger0.09407Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.09407Inherited
FHA domain0.1033Inherited
Extended AAA-ATPase domain0.1168Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1513Inherited
Cold shock DNA-binding domain-like0.1513Inherited
Canonical RBD0.1605Inherited
LIM domain0.1916Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1916Inherited
DBL homology domain (DH-domain)0.1916Inherited
I set domains0.2052Inherited
Protein kinases, catalytic subunit0.212Inherited
Cyclin0.241Inherited
Synaptotagmin-like (S variant)0.241Inherited
Elongation factors0.3032Inherited
Sec1/munc18-like (SM) proteins0.3032Inherited
Nitrogenase iron protein-like0.3814Inherited
RecA protein-like (ATPase-domain)0.3814Inherited
Prefoldin0.3814Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.4729Inherited
Pumilio repeat0.5496Inherited
Clathrin adaptor core protein0.7186Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.8085Inherited
PDZ domain0.8345Inherited
Tropomyosin0.8599Inherited
Growth factor receptor domain0.9225Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.9225Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Type II DNA topoisomerase0Direct
Zn-finger domain of Sec23/240Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin domains0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Integrin alpha N-terminal domain0Direct
Sm-like ribonucleoproteins0.00000001015Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00002768Direct
Cysteine-rich domain0.00005664Direct
Spectrin repeat0.00005906Direct
Translation proteins SH3-like domain0.0001498Direct
Ribosomal proteins S24e, L23 and L15e0.0001694Direct
Class II aaRS ABD-related0.0005051Direct
Calpain large subunit, middle domain (domain III)0.0005051Direct
P-loop containing nucleoside triphosphate hydrolases0.000669Direct
Metal cation-transporting ATPase, ATP-binding domain N0.0007788Direct
Actin depolymerizing proteins0.0008347Direct
Cdc48 domain 2-like0.001074Inherited
Annexin0.001074Inherited
ADC-like0.001074Inherited
beta-sandwich domain of Sec23/240.001074Inherited
Calcium ATPase, transmembrane domain M0.001215Inherited
Zn-binding ribosomal proteins0.002434Inherited
Calcium ATPase, transduction domain A0.00245Inherited
PLC-like phosphodiesterases0.004111Inherited
S15/NS1 RNA-binding domain0.004394Inherited
F1F0 ATP synthase subunit C0.004394Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.004397Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.01028Inherited
L30e-like0.01028Inherited
Myosin rod fragments0.01028Inherited
Translational machinery components0.01094Inherited
SH2 domain0.01209Inherited
Calponin-homology domain, CH-domain0.01209Inherited
Second domain of FERM0.0143Inherited
Actin-like ATPase domain0.02Inherited
Nucleic acid-binding proteins0.02499Inherited
Fibronectin type III0.03833Inherited
SH3-domain0.04407Inherited
Tubulin C-terminal domain-like0.05422Inherited
Tubulin nucleotide-binding domain-like0.06933Inherited
SMAD/FHA domain0.07143Inherited
vWA-like0.0731Inherited
DNA/RNA polymerases0.07382Inherited
CCCH zinc finger0.08846Inherited
Class II aaRS and biotin synthetases0.08846Inherited
PH domain-like0.08964Inherited
Concanavalin A-like lectins/glucanases0.1075Inherited
Ribosomal protein S5 domain 2-like0.1131Inherited
Immunoglobulin0.124Inherited
EF-hand0.1446Inherited
Protein kinase-like (PK-like)0.1514Inherited
GTPase activation domain, GAP0.1821Inherited
DBL homology domain (DH-domain)0.1829Inherited
Cyclin-like0.1829Inherited
ARM repeat0.225Inherited
Sec1/munc18-like (SM) proteins0.2935Inherited
Prefoldin0.2935Inherited
Troponin coil-coiled subunits0.2935Inherited
EGF/Laminin0.2952Inherited
RNA-binding domain, RBD0.3638Inherited
PYP-like sensor domain (PAS domain)0.3706Inherited
Translation proteins0.3902Inherited
GroEL apical domain-like0.3902Inherited
GroEL equatorial domain-like0.4579Inherited
GroEL-intermediate domain like0.4579Inherited
RBP11-like subunits of RNA polymerase0.4645Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.4645Inherited
HAD-like0.4789Inherited
TPR-like0.6083Inherited
Glutathione synthetase ATP-binding domain-like0.614Inherited
Growth factor receptor domain0.6331Inherited
Voltage-gated potassium channels0.6795Inherited
Activating enzymes of the ubiquitin-like proteins0.7039Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.7039Inherited
PDZ domain-like0.8075Inherited
Tropomyosin0.8453Inherited
dsRNA-binding domain-like0.8453Inherited
L domain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    56112,48371
  • 56112 - Protein kinase-like (PK-like)
  • 48371 - ARM repeat
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.000003978Direct
    54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.0001518Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0001518Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.0001518Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.0007788Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.001074Inherited
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.001074Inherited
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.001074Inherited
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.002425Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.002434Inherited
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.004394Inherited
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.005432Inherited
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.01028Inherited
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0.01094Inherited
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.0133Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.02Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.02148Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.02148Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.05116Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.06933Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.06933Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.1131Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.1821Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.1918Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1918Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.232Inherited
    50978,50978
  • 50978 - WD40 repeat-like
  • 50978 - WD40 repeat-like
  • 0.232Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.2935Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.2935Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.329Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.3706Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.4579Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4579Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.4645Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,49265,48726
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0Direct
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000008918Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00001905Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.00245Inherited
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.005432Inherited
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00843Inherited
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.01028Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.232Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.3367Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4579Inherited
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.4645Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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