SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): coiling variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   behavior variant [WBPhenotype:0000517] <2>(133|132) (135|53|20)
+ + 2:   organism behavior variant [WBPhenotype:0000525] <21>(133|132) (135|53|20)
+ 1:   body posture variant [WBPhenotype:0000001] <7>(15|18) (15|5|2)
0:   coiling variant [WBPhenotype:0002297] <2>(8|10) (8|2|0)
- 1:   coiler [WBPhenotype:0000565] <2>(0|0) (0|0|0)
- 1:   coiling frequency [WBPhenotype:0002298] <2>(8|9) (8|2|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
SMAD MH1 domain0.000003533Direct
SMAD/FHA domain0.00009499Direct
cAMP-binding domain-like0.0001898Direct
Homeodomain-like0.0008614Direct
Voltage-gated potassium channels0.07242Inherited
SNF-like0.2323Inherited
Transducin (alpha subunit), insertion domain0.6381Inherited
Insulin-like0.9884Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Pleckstrin-homology domain (PH domain)0.000001775Direct
SMAD MH1 domain0.000007125Direct
SMAD domain0.00003115Direct
cAMP-binding domain0.0002748Direct
Homeodomain0.0008886Direct
Voltage-gated potassium channels0.07988Inherited
SNF-like0.2009Inherited
Transducin (alpha subunit), insertion domain0.5927Inherited
Rhodopsin-like0.5965Inherited
Insulin-like0.9715Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
SMAD MH1 domain0.000002888Direct
SMAD/FHA domain0.00007835Direct
cAMP-binding domain-like0.0001569Direct
Homeodomain-like0.0007209Direct
Voltage-gated potassium channels0.06481Inherited
SNF-like0.2151Inherited
Transducin (alpha subunit), insertion domain0.6165Inherited
Insulin-like0.9775Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48403,48403
  • 48403 - Ankyrin repeat
  • 48403 - Ankyrin repeat
  • 0.00002231Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.6165Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)