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Worm Phenotype (WP): cell organization biogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <5>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(444|532) (446|238|67)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <9>(106|107) (110|55|17)
+ 1:   cell component morphology variant [WBPhenotype:0002089] <20>(84|88) (84|43|9)
0:   cell organization biogenesis variant [WBPhenotype:0010002] <6>(39|43) (40|19|4)
- 1:   organelle organization biogenesis variant [WBPhenotype:0001344] <13>(22|26) (23|7|1)
- 1:   embryonic cell organization biogenesis variant [WBPhenotype:0000764] <6>(13|17) (13|7|0)
- 1:   cytoplasmic appearance variant [WBPhenotype:0001427] <3>(5|5) (5|2|0)
- 1:   DAPI staining variant [WBPhenotype:0001233](0|0) (0|0|0)
- 1:   cell membrane organization biogenesis variant [WBPhenotype:0001982](8|9) (8|4|1)
- 1:   supernumerary asters [WBPhenotype:0002387](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Heme-dependent catalase-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like9.238e-16Direct
Prefoldin0.00001213Direct
beta-sandwich domain of Sec23/240.000089Direct
ADC-like0.000089Direct
Cdc48 domain 2-like0.000089Direct
F1F0 ATP synthase subunit C0.0003937Direct
CAD & PB1 domains0.0003937Direct
P-loop containing nucleoside triphosphate hydrolases0.0005333Direct
GroEL-intermediate domain like0.002359Inherited
GroEL apical domain-like0.002359Inherited
GroEL equatorial domain-like0.002359Inherited
Tubulin C-terminal domain-like0.01148Inherited
ARM repeat0.01553Inherited
Tubulin nucleotide-binding domain-like0.02042Inherited
Nucleic acid-binding proteins0.03835Inherited
POZ domain0.04357Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04773Inherited
DNA/RNA polymerases0.08499Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.1349Inherited
Cyclin-like0.1678Inherited
WD40 repeat-like0.201Inherited
Calponin-homology domain, CH-domain0.2185Inherited
Actin-like ATPase domain0.2275Inherited
Transducin (alpha subunit), insertion domain0.2317Inherited
TPR-like0.2502Inherited
SNARE-like0.2963Inherited
PDZ domain-like0.4052Inherited
"Winged helix" DNA-binding domain0.4594Inherited
Class II aaRS and biotin synthetases0.5354Inherited
Translation proteins SH3-like domain0.5607Inherited
SH3-domain0.5645Inherited
PH domain-like0.8756Inherited
NAD(P)-binding Rossmann-fold domains1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Heme-dependent catalases0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Skp1 dimerisation domain-like0.000000000000003227Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000009244Direct
Armadillo repeat0.0000001532Direct
RecA protein-like (ATPase-domain)0.00000126Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00000126Direct
Prefoldin0.000007889Direct
BTB/POZ domain0.00001801Direct
Cdc48 N-terminal domain-like0.0001456Direct
Cdc48 domain 2-like0.0001456Direct
Anticodon-binding domain0.0001456Direct
F1F0 ATP synthase subunit C0.0006411Direct
DEP domain0.0006411Direct
Extended AAA-ATPase domain0.0009271Direct
DNA polymerase I0.003584Inherited
G proteins0.007063Inherited
Tubulin, C-terminal domain0.01061Inherited
Tubulin, GTPase domain0.01892Inherited
DnaQ-like 3'-5' exonuclease0.03813Inherited
Pumilio repeat0.0388Inherited
Cyclin0.07077Inherited
Motor proteins0.08192Inherited
WD40-repeat0.09149Inherited
Proteasome subunits0.1171Inherited
Calponin-homology domain, CH-domain0.2124Inherited
Actin/HSP700.2124Inherited
Transducin (alpha subunit), insertion domain0.2193Inherited
Phosphotyrosine-binding domain (PTB)0.2529Inherited
Protein kinases, catalytic subunit0.3452Inherited
Clathrin adaptor core protein0.3873Inherited
PDZ domain0.4028Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.5274Inherited
SH3-domain0.5621Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.8021Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Heme-dependent catalase-like0Direct
Skp1 dimerisation domain-like7.169e-16Direct
Prefoldin0.000009812Direct
Cdc48 domain 2-like0.00007251Direct
ADC-like0.00007251Direct
beta-sandwich domain of Sec23/240.00007251Direct
CAD & PB1 domains0.0003229Direct
F1F0 ATP synthase subunit C0.0003229Direct
P-loop containing nucleoside triphosphate hydrolases0.0004389Direct
GroEL equatorial domain-like0.001972Inherited
GroEL-intermediate domain like0.001972Inherited
GroEL apical domain-like0.001972Inherited
Tubulin C-terminal domain-like0.009826Inherited
ARM repeat0.01336Inherited
Tubulin nucleotide-binding domain-like0.01767Inherited
Nucleic acid-binding proteins0.03364Inherited
POZ domain0.03831Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0421Inherited
DNA/RNA polymerases0.07613Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.1226Inherited
Cyclin-like0.1534Inherited
WD40 repeat-like0.1847Inherited
Calponin-homology domain, CH-domain0.2015Inherited
Actin-like ATPase domain0.2101Inherited
Transducin (alpha subunit), insertion domain0.2141Inherited
TPR-like0.232Inherited
SNARE-like0.2769Inherited
PDZ domain-like0.3839Inherited
"Winged helix" DNA-binding domain0.4375Inherited
Class II aaRS and biotin synthetases0.5129Inherited
Translation proteins SH3-like domain0.5382Inherited
SH3-domain0.542Inherited
Sm-like ribonucleoproteins0.6267Inherited
PH domain-like0.8603Inherited
NAD(P)-binding Rossmann-fold domains1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.000000000000001433Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00007251Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0003229Direct
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0.0008734Direct
    57625,57625
  • 57625 - Invertebrate chitin-binding proteins
  • 57625 - Invertebrate chitin-binding proteins
  • 0.0008734Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.001972Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.001972Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.01767Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.06827Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.09258Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.1534Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1618Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.2101Inherited
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.2141Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57625,57625,57625
  • 57625 - Invertebrate chitin-binding proteins
  • 57625 - Invertebrate chitin-binding proteins
  • 57625 - Invertebrate chitin-binding proteins
  • 0.0003229Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.001972Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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