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Xenopus ANatomical entity (XAN): neural tube

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + 2:   nervous system [XAO:0000177] <11>(134|201) (141|114|53)
+ + 2:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + 2:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + 2:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ 1:   embryonic structure [XAO:0003042] <58>(42|52) (43|27|13)
+ 1:   central nervous system [XAO:0000215] <7>(129|191) (135|108|49)
0:   neural tube [XAO:0003204] <7>(8|11) (9|3|2)
- 1:   neurenteric canal [XAO:0005245] <1>(1|1) (1|0|0)
- 1:   anterior neural tube [XAO:0000307](1|2) (1|0|0)
- 1:   chordoneural hinge [XAO:0000108](4|5) (4|1|1)
- 1:   dorsolateral neural tube [XAO:0004617](0|0) (0|0|0)
- 1:   posterior neural tube [XAO:0000250](1|2) (1|1|0)
- 1:   sulcus limitans of neural tube [XAO:0005070](0|0) (0|0|0)
- 1:   ventrolateral neural tube [XAO:0004616](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000008318Direct
Cytokine0.0000000365Direct
"Winged helix" DNA-binding domain0.000002485Direct
Orange domain-like0.00002363Direct
Frizzled cysteine-rich domain0.000197Direct
Cystine-knot cytokines0.0002054Direct
lambda repressor-like DNA-binding domains0.0002455Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
Noggin0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000004515Direct
Fibroblast growth factors (FGF)0.00000001295Direct
Hairy Orange domain0.00002704Direct
P4 origin-binding domain-like0.0000283Direct
POU-specific domain0.00005753Direct
VWC domain0.0001082Direct
Paired domain0.0001099Direct
Forkhead DNA-binding domain0.0002Direct
Frizzled cysteine-rich domain0.0002584Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000005771Direct
Cytokine0.00000002565Direct
"Winged helix" DNA-binding domain0.000001776Direct
Orange domain-like0.00001714Direct
Frizzled cysteine-rich domain0.0001464Direct
Cystine-knot cytokines0.0001527Direct
lambda repressor-like DNA-binding domains0.000183Direct
FnI-like domain0.000822Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.00001714Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.000972Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.01044Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0001756Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02175Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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