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Xenopus ANatomical entity (XAN): ectoderm

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + + 4:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ + 2:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
+ 1:   primary germ layer [XAO:0003011] <4>(109|155) (109|73|30)
0:   ectoderm [XAO:0000001] <15>(62|85) (62|43|11)
- 1:   epidermis [XAO:0000028] <10>(3|6) (3|2|0)
- 1:   fin [XAO:0000002] <9>(8|8) (9|1|2)
- 1:   neuroectoderm [XAO:0000042] <9>(27|31) (27|15|5)
- 1:   animal cap [XAO:0000036] <2>(1|1) (1|1|0)
- 1:   cranial placode [XAO:0000305] <2>(12|14) (12|6|2)
- 1:   mouth primordium [XAO:0000269] <2>(3|3) (3|0|0)
- 1:   neural plate border [XAO:0004104] <2>(5|6) (6|2|0)
- 1:   non-neural ectoderm [XAO:0004091] <2>(3|3) (3|1|0)
- 1:   hatching gland [XAO:0000034] <1>(0|0) (0|0|0)
- 1:   ectodermal cell [XAO:0003245](0|0) (0|0|0)
- 1:   hypophyseal primordium [XAO:0000267](0|1) (0|0|0)
- 1:   non-involuting marginal zone [XAO:0000253](1|1) (1|2|1)
- 1:   sensorial layer [XAO:0000320](2|2) (2|0|0)
- 1:   stomodeal-hypophyseal primordium [XAO:0000032](3|3) (3|1|0)
- 1:   trunk placode [XAO:0000461](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleoplasmin-like core domain0Direct
C-terminal domain of adenylylcyclase associated protein0Direct
PAH2 domain0Direct
RBP11-like subunits of RNA polymerase0Direct
Synuclein0Direct
E2F-DP heterodimerization region0Direct
F1F0 ATP synthase subunit C0Direct
Tim10-like0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
Moesin tail domain0Direct
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
alpha-catenin/vinculin-like0Direct
Ribulose-phoshate binding barrel0Direct
Zn-binding ribosomal proteins0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex0Direct
PLP-binding barrel0Direct
Surp module (SWAP domain)0Direct
SPOC domain-like0Direct
TK C-terminal domain-like0Direct
SMAD MH1 domain0Direct
Uracil-DNA glycosylase-like0Direct
Hedgehog/DD-peptidase0Direct
Zn-finger domain of Sec23/240Direct
Alanine racemase C-terminal domain-like0Direct
DLC0Direct
Nop domain0Direct
Notch domain0Direct
Ribosomal proteins L15p and L18e0Direct
LuxS/MPP-like metallohydrolase0Direct
Ribosomal protein L10-like0Direct
Ribosomal L27 protein-like0Direct
Delta-sleep-inducing peptide immunoreactive peptide0Direct
14-3-3 protein0Direct
RNA-binding domain, RBD0.000001407Direct
Frizzled cysteine-rich domain0.00227Inherited
"Winged helix" DNA-binding domain0.00327Inherited
Homeodomain-like0.003506Inherited
Tubulin C-terminal domain-like0.004005Inherited
Tubulin nucleotide-binding domain-like0.01048Inherited
HLH, helix-loop-helix DNA-binding domain0.02078Inherited
Orange domain-like0.04289Inherited
Sema domain0.04977Inherited
Snake toxin-like0.05398Inherited
Cytokine0.13Inherited
Intermediate filament protein, coiled coil region0.1309Inherited
Plexin repeat0.1802Inherited
beta-beta-alpha zinc fingers0.2214Inherited
HMG-box0.2332Inherited
Cyclin-like0.3664Inherited
Kazal-type serine protease inhibitors0.4161Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.5738Inherited
TIMP-like0.6518Inherited
lambda repressor-like DNA-binding domains0.7349Inherited
Growth factor receptor domain0.7394Inherited
p53-like transcription factors0.7579Inherited
Cystine-knot cytokines0.9129Inherited
Kringle-like0.9228Inherited
Cadherin-like0.9937Inherited
EGF/Laminin1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog (development protein), N-terminal signaling domain0Direct
Ferritin0Direct
Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain0Direct
NTF2-like0Direct
Branched-chain alpha-keto acid dehydrogenase Pyr module0Direct
SMAD MH1 domain0Direct
E2F dimerization segment0Direct
Cell cycle transcription factor e2f-dp0Direct
14-3-3 protein0Direct
HAT/Suf repeat0Direct
RUNT domain0Direct
Prefoldin0Direct
F1F0 ATP synthase subunit C0Direct
TRASH domain0Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Extracellular domain of cell surface receptors0Direct
MPP-like0Direct
Alpha-adaptin ear subdomain-like0Direct
Notch domain0Direct
SIAH, seven in absentia homolog0Direct
DLC0Direct
Delta-sleep-inducing peptide immunoreactive peptide0Direct
Nucleoplasmin-like core domain0Direct
Alanine racemase-like, N-terminal domain0Direct
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex0Direct
SMAD domain0Direct
C-terminal domain of adenylylcyclase associated protein0Direct
Branched-chain alpha-keto acid dehydrogenase PP module0Direct
Ubiquitin carboxyl-terminal hydrolase UCH-L0Direct
Moesin tail domain0Direct
CAT-like0Direct
Noggin0Direct
Eukaryotic ODC-like0Direct
Tim10/DDP0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Ribosomal proteins L15p and L18e0Direct
PAH2 domain0Direct
alpha-catenin/vinculin0Direct
ECR1 N-terminal domain-like0Direct
P4 origin-binding domain-like0Direct
Pseudouridine synthase I TruA0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ran-binding domain0Direct
S-adenosylhomocystein hydrolase0Direct
Nop domain0Direct
SH3BGR (SH3-binding, glutamic acid-rich protein-like)0Direct
Synuclein0Direct
Surp module (SWAP domain)0Direct
Polo-box duplicated region0Direct
NLI interacting factor-like phosphatase0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
GDI-like N domain0Direct
Clathrin adaptor appendage, alpha and beta chain-specific domain0Direct
Canonical RBD0.000007931Direct
Frizzled cysteine-rich domain0.00225Inherited
Tubulin, GTPase domain0.003916Inherited
Tubulin, C-terminal domain0.003916Inherited
Sema domain0.006112Inherited
Homeodomain0.006731Inherited
HLH, helix-loop-helix DNA-binding domain0.01673Inherited
Forkhead DNA-binding domain0.02511Inherited
Cell cycle control phosphatase, catalytic domain0.03452Inherited
Hairy Orange domain0.03935Inherited
Intermediate filament protein, coiled coil region0.1202Inherited
Fibroblast growth factors (FGF)0.1335Inherited
LIM domain0.1501Inherited
Classic zinc finger, C2H20.1539Inherited
Plexin repeat0.1834Inherited
Ephrin ectodomain0.1896Inherited
Arginine methyltransferase0.1896Inherited
HMG-box0.2107Inherited
POU-specific domain0.2203Inherited
Ephrin receptor ligand binding domain0.2317Inherited
Glutathione peroxidase-like0.2566Inherited
Cyclin0.2584Inherited
Ovomucoid domain III-like0.4066Inherited
Growth factor receptor domain0.4714Inherited
ets domain0.552Inherited
Multidrug efflux transporter AcrB transmembrane domain0.6364Inherited
Transforming growth factor (TGF)-beta0.6869Inherited
Paired domain0.7397Inherited
T-box0.9831Inherited
Calmodulin-like1Inherited
Kringle modules1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-binding ribosomal proteins0Direct
14-3-3 protein0Direct
Hedgehog/DD-peptidase0Direct
PLP-binding barrel0Direct
Surp module (SWAP domain)0Direct
Zn-finger domain of Sec23/240Direct
LuxS/MPP-like metallohydrolase0Direct
Nop domain0Direct
F1F0 ATP synthase subunit C0Direct
Synuclein0Direct
SPOC domain-like0Direct
Nucleoplasmin-like core domain0Direct
TK C-terminal domain-like0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
GINS helical bundle-like0Direct
SMAD MH1 domain0Direct
Moesin tail domain0Direct
E2F-DP heterodimerization region0Direct
DLC0Direct
alpha-catenin/vinculin-like0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Uracil-DNA glycosylase-like0Direct
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex0Direct
Ribosomal L27 protein-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal proteins L15p and L18e0Direct
PAH2 domain0Direct
RBP11-like subunits of RNA polymerase0Direct
Tim10-like0Direct
Ribosomal protein L10-like0Direct
C-terminal domain of adenylylcyclase associated protein0Direct
Ribulose-phoshate binding barrel0Direct
Alanine racemase C-terminal domain-like0Direct
PriA/YqbF domain0Direct
Notch domain0Direct
Delta-sleep-inducing peptide immunoreactive peptide0Direct
RNA-binding domain, RBD0.000001003Direct
Frizzled cysteine-rich domain0.00174Inherited
"Winged helix" DNA-binding domain0.002515Inherited
Homeodomain-like0.002697Inherited
Tubulin C-terminal domain-like0.00309Inherited
Tubulin nucleotide-binding domain-like0.008222Inherited
HLH, helix-loop-helix DNA-binding domain0.01649Inherited
Orange domain-like0.03506Inherited
Sema domain0.04088Inherited
Snake toxin-like0.04441Inherited
Cytokine0.1121Inherited
Intermediate filament protein, coiled coil region0.113Inherited
Plexin repeat0.1581Inherited
beta-beta-alpha zinc fingers0.1968Inherited
HMG-box0.2079Inherited
Cyclin-like0.3354Inherited
Kazal-type serine protease inhibitors0.3837Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.5376Inherited
TIMP-like0.6158Inherited
lambda repressor-like DNA-binding domains0.6999Inherited
Growth factor receptor domain0.7045Inherited
p53-like transcription factors0.7232Inherited
Cystine-knot cytokines0.8848Inherited
Kringle-like0.8949Inherited
Cadherin-like0.9686Inherited
EGF/Laminin1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0Direct
    110324,50249
  • 110324 - Ribosomal L27 protein-like
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    57756,57756
  • 57756 - Retrovirus zinc finger-like domains
  • 57756 - Retrovirus zinc finger-like domains
  • 0Direct
    52518,52922
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 52922 - TK C-terminal domain-like
  • 0Direct
    51230,47005
  • 51230 - Single hybrid motif
  • 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    52518,52518
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 0Direct
    57196,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 0Direct
    82615,82615
  • 82615 - Polo-box domain
  • 82615 - Polo-box domain
  • 0Direct
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    47005,52777
  • 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
  • 52777 - CoA-dependent acyltransferases
  • 0Direct
    53223,51735
  • 53223 - Aminoacid dehydrogenase-like, N-terminal domain
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0Direct
    47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    48371,46785
  • 48371 - ARM repeat
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    57184,100895
  • 57184 - Growth factor receptor domain
  • 100895 - Kazal-type serine protease inhibitors
  • 0Direct
    46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.0008475Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.00309Inherited
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.01575Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.02484Inherited
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.03506Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.03922Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.04088Inherited
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.06076Inherited
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.06076Inherited
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.06184Inherited
    64593,64593
  • 64593 - Intermediate filament protein, coiled coil region
  • 64593 - Intermediate filament protein, coiled coil region
  • 0.1154Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.1798Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.2175Inherited
    56112,47769
  • 56112 - Protein kinase-like (PK-like)
  • 47769 - SAM/Pointed domain
  • 0.3213Inherited
    57440,57440
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 0.3213Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.5571Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.6576Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.8401Inherited
    81383,52047
  • 81383 - F-box domain
  • 52047 - RNI-like
  • 0.8487Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.9766Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54791,54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    47220,47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0Direct
    50249,50249,50249
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    51230,47005,52777
  • 51230 - Single hybrid motif
  • 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
  • 52777 - CoA-dependent acyltransferases
  • 0Direct
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.01575Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.01927Inherited
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.08832Inherited
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.4733Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.7546Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.8856Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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