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Xenopus ANatomical entity (XAN): mesoderm

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   whole organism [XAO:0003004] <12>(448|575) (454|327|143)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(574|728) (574|396|161)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(435|562) (438|323|141)
+ + 2:   embryo [XAO:0000113] <8>(132|186) (134|89|36)
+ + 2:   tissue [XAO:0003040] <184>(179|248) (186|126|57)
+ 1:   primary germ layer [XAO:0003011] <4>(107|153) (108|72|28)
0:   mesoderm [XAO:0000050] <9>(28|40) (28|13|8)
- 1:   lateral plate mesoderm [XAO:0000311] <6>(10|13) (10|5|2)
- 1:   somite [XAO:0000058] <5>(10|10) (10|4|2)
- 1:   mesodermal cell [XAO:0003255] <1>(3|3) (3|0|0)
- 1:   paraxial mesoderm [XAO:0000259] <1>(5|10) (5|3|2)
- 1:   head mesoderm [XAO:0000053](5|6) (5|0|0)
- 1:   intermediate mesoderm [XAO:0000085](4|4) (4|1|0)
- 1:   migrating macrophage [XAO:0005037](0|0) (0|0|0)
- 1:   presumptive paraxial mesoderm [XAO:0004134](1|2) (1|0|0)
- 1:   splanchnic layer of lateral plate mesoderm [XAO:0000276](1|1) (1|1|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
Hedgehog/DD-peptidase0Direct
Homeodomain-like0.000000000000671Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000039Direct
Frizzled cysteine-rich domain0.0000000000511Direct
Cytokine0.0000006136Direct
Cystine-knot cytokines0.000004463Direct
Orange domain-like0.00001309Direct
Troponin coil-coiled subunits0.00007146Direct
p53-like transcription factors0.0002534Direct
Snake toxin-like0.0002831Direct
SMAD MH1 domain0.0005216Direct
FnI-like domain0.001774Inherited
14-3-3 protein0.001846Inherited
"Winged helix" DNA-binding domain0.003368Inherited
PYP-like sensor domain (PAS domain)0.003433Inherited
Protein kinase-like (PK-like)0.01183Inherited
SRF-like0.02096Inherited
GroEL apical domain-like0.02407Inherited
GroEL-intermediate domain like0.02407Inherited
GroEL equatorial domain-like0.02407Inherited
Actin-like ATPase domain0.04999Inherited
Globin-like0.05745Inherited
Tropomyosin0.08444Inherited
Hemopexin-like domain0.1505Inherited
beta-beta-alpha zinc fingers0.2104Inherited
Integrin domains0.237Inherited
Metalloproteases ("zincins"), catalytic domain0.3319Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Extracellular domain of cell surface receptors0Direct
Troponin I0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Guanido kinase N-terminal domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Guanido kinase catalytic domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Noggin0Direct
Pointed domain0Direct
Homeodomain0.000000000003337Direct
HLH, helix-loop-helix DNA-binding domain0.00000000002121Direct
Frizzled cysteine-rich domain0.000000000117Direct
ets domain0.00000000179Direct
Fibroblast growth factors (FGF)0.000002983Direct
Transforming growth factor (TGF)-beta0.00001017Direct
Hairy Orange domain0.00001648Direct
Growth factor receptor domain0.00002655Direct
L domain0.00007979Direct
Paired domain0.0001602Direct
VWC domain0.0002104Direct
T-box0.0004464Direct
Erythroid transcription factor GATA-10.0004611Direct
SMAD MH1 domain0.0005583Direct
Forkhead DNA-binding domain0.0006404Direct
14-3-3 protein0.001906Inherited
Parvalbumin0.002301Inherited
Actin/HSP700.004398Inherited
Protein kinases, catalytic subunit0.008488Inherited
SRF-like0.02013Inherited
Glutathione peroxidase-like0.02236Inherited
Tropomyosin0.05116Inherited
Classic zinc finger, C2H20.05238Inherited
Group II chaperonin (CCT, TRIC), apical domain0.0593Inherited
Globins0.06081Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.06531Inherited
Link domain0.07504Inherited
Matrix metalloproteases, catalytic domain0.08684Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1317Inherited
Hemopexin-like domain0.1648Inherited
Integrin domains0.253Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
Hedgehog/DD-peptidase0Direct
Homeodomain-like0.0000000000004624Direct
HLH, helix-loop-helix DNA-binding domain0.000000000002691Direct
Frizzled cysteine-rich domain0.00000000003536Direct
Cytokine0.0000004321Direct
Cystine-knot cytokines0.000003175Direct
Orange domain-like0.000009403Direct
Troponin coil-coiled subunits0.00005223Direct
p53-like transcription factors0.000188Direct
Snake toxin-like0.0002106Direct
SMAD MH1 domain0.0003906Direct
FnI-like domain0.001353Inherited
14-3-3 protein0.001409Inherited
"Winged helix" DNA-binding domain0.002586Inherited
PYP-like sensor domain (PAS domain)0.002635Inherited
Protein kinase-like (PK-like)0.009277Inherited
SRF-like0.01663Inherited
GroEL apical domain-like0.01917Inherited
GroEL-intermediate domain like0.01917Inherited
GroEL equatorial domain-like0.01917Inherited
Actin-like ATPase domain0.04098Inherited
Globin-like0.04733Inherited
Tropomyosin0.07077Inherited
Hemopexin-like domain0.1308Inherited
beta-beta-alpha zinc fingers0.1865Inherited
Integrin domains0.2118Inherited
Metalloproteases ("zincins"), catalytic domain0.3021Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.000009403Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.00005223Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00005223Direct
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.0003347Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.0003347Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.00942Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.009755Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.02515Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.04849Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.04849Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.1165Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0003347Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.000584Direct
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.01663Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.01917Inherited
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0201Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.04849Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.8163Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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