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Xenopus ANatomical entity (XAN): mesoderm

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   whole organism [XAO:0003004] <12>(462|598) (465|335|145)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|565) (440|325|142)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
+ + 2:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ 1:   primary germ layer [XAO:0003011] <4>(109|155) (109|73|30)
0:   mesoderm [XAO:0000050] <9>(28|38) (28|13|8)
- 1:   lateral plate mesoderm [XAO:0000311] <6>(9|11) (10|3|1)
- 1:   somite [XAO:0000058] <5>(8|11) (10|6|3)
- 1:   mesodermal cell [XAO:0003255] <1>(3|3) (3|0|0)
- 1:   paraxial mesoderm [XAO:0000259] <1>(5|9) (5|3|2)
- 1:   head mesoderm [XAO:0000053](5|6) (5|0|0)
- 1:   intermediate mesoderm [XAO:0000085](4|4) (4|1|0)
- 1:   migrating macrophage [XAO:0005037](0|0) (0|0|0)
- 1:   presumptive paraxial mesoderm [XAO:0004134](1|2) (1|0|0)
- 1:   splanchnic layer of lateral plate mesoderm [XAO:0000276](1|1) (1|1|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
Hedgehog/DD-peptidase0Direct
Homeodomain-like0.000000000002166Direct
HLH, helix-loop-helix DNA-binding domain0.000000000007128Direct
Frizzled cysteine-rich domain0.0000000000712Direct
Cytokine0.0000007824Direct
Cystine-knot cytokines0.0000009237Direct
Orange domain-like0.00001524Direct
p53-like transcription factors0.0003196Direct
Snake toxin-like0.0003287Direct
Troponin coil-coiled subunits0.0004583Direct
SMAD MH1 domain0.0005846Direct
PYP-like sensor domain (PAS domain)0.000841Direct
14-3-3 protein0.002042Inherited
FnI-like domain0.002106Inherited
"Winged helix" DNA-binding domain0.0028Inherited
Protein kinase-like (PK-like)0.02119Inherited
SRF-like0.02241Inherited
GroEL apical domain-like0.02629Inherited
GroEL-intermediate domain like0.02629Inherited
GroEL equatorial domain-like0.02629Inherited
Actin-like ATPase domain0.05759Inherited
Globin-like0.06199Inherited
Hemopexin-like domain0.06462Inherited
Tropomyosin0.1115Inherited
Metalloproteases ("zincins"), catalytic domain0.1834Inherited
beta-beta-alpha zinc fingers0.1938Inherited
Integrin domains0.2518Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Guanido kinase catalytic domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Extracellular domain of cell surface receptors0Direct
Pointed domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Guanido kinase N-terminal domain0Direct
Noggin0Direct
Homeodomain0.000000000009037Direct
HLH, helix-loop-helix DNA-binding domain0.00000000003797Direct
Frizzled cysteine-rich domain0.0000000001584Direct
ets domain0.00000000239Direct
Fibroblast growth factors (FGF)0.000003687Direct
Transforming growth factor (TGF)-beta0.000004979Direct
Hairy Orange domain0.00001897Direct
Growth factor receptor domain0.00003559Direct
L domain0.00008865Direct
Paired domain0.000183Direct
VWC domain0.0002408Direct
Erythroid transcription factor GATA-10.0005116Direct
T-box0.0005213Direct
Hypoxia-inducible factor Hif2a, C-terminal domain0.0006021Direct
SMAD MH1 domain0.0006252Direct
Forkhead DNA-binding domain0.0008211Direct
14-3-3 protein0.002104Inherited
Parvalbumin0.002505Inherited
Actin/HSP700.005196Inherited
Matrix metalloproteases, catalytic domain0.01137Inherited
Protein kinases, catalytic subunit0.0144Inherited
SRF-like0.02151Inherited
Glutathione peroxidase-like0.02459Inherited
Classic zinc finger, C2H20.03015Inherited
Group II chaperonin (CCT, TRIC), apical domain0.06354Inherited
Globins0.06546Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.06962Inherited
Tropomyosin0.07112Inherited
Hemopexin-like domain0.07257Inherited
Integrin domains0.2672Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
Hedgehog/DD-peptidase0Direct
Homeodomain-like0.000000000001504Direct
HLH, helix-loop-helix DNA-binding domain0.000000000004956Direct
Frizzled cysteine-rich domain0.0000000000496Direct
Cytokine0.0000005544Direct
Cystine-knot cytokines0.0000006556Direct
Orange domain-like0.00001101Direct
p53-like transcription factors0.0002391Direct
Snake toxin-like0.0002459Direct
Troponin coil-coiled subunits0.0003446Direct
SMAD MH1 domain0.0004409Direct
PYP-like sensor domain (PAS domain)0.0006368Direct
14-3-3 protein0.001564Inherited
FnI-like domain0.001613Inherited
"Winged helix" DNA-binding domain0.002155Inherited
Protein kinase-like (PK-like)0.01683Inherited
SRF-like0.01782Inherited
GroEL equatorial domain-like0.02103Inherited
GroEL apical domain-like0.02103Inherited
GroEL-intermediate domain like0.02103Inherited
Actin-like ATPase domain0.04753Inherited
Globin-like0.05119Inherited
Hemopexin-like domain0.05346Inherited
Tropomyosin0.09485Inherited
Metalloproteases ("zincins"), catalytic domain0.161Inherited
beta-beta-alpha zinc fingers0.1706Inherited
Integrin domains0.2252Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.00001101Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0000588Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.0000588Direct
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.0003686Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.0003686Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.001583Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.007319Inherited
    55785,55785
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.007579Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.01156Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.02989Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.1255Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0003686Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.000664Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.007579Inherited
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.01782Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.02103Inherited
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02177Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.6541Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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