SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): notochord

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(462|598) (465|335|145)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|565) (440|325|142)
+ 1:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
0:   notochord [XAO:0000055] <6>(12|15) (13|9|5)
- 1:   caudal notochord [XAO:0005239](0|0) (0|0|0)
- 1:   flexural organ [XAO:0005227](0|0) (0|0|0)
- 1:   notochordal sheath [XAO:0000415](2|2) (2|1|0)
- 1:   perichordal tissue [XAO:0004050](0|0) (0|0|0)
- 1:   rostral notochord [XAO:0005238](0|0) (0|0|0)
- 1:   vacuolated notochordal tissue [XAO:0004054](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Cystine-knot cytokines0.00001113Direct
EGF/Laminin0.00001163Direct
Homeodomain-like0.00003176Direct
Kazal-type serine protease inhibitors0.00006663Direct
Growth factor receptor domain0.00008974Direct
Cytokine0.0001018Direct
Hemopexin-like domain0.0001018Direct
PGBD-like0.000253Direct
Phosphoglycerate mutase-like0.000253Direct
p53-like transcription factors0.000403Direct
FnI-like domain0.0004066Direct
Metalloproteases ("zincins"), catalytic domain0.01843Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Transforming growth factor (TGF)-beta0.00002647Direct
T-box0.00003522Direct
Matrix metalloproteases, catalytic domain0.00003549Direct
Extracellular domain of cell surface receptors0.00003661Direct
Growth factor receptor domain0.00003868Direct
Homeodomain0.00004627Direct
Fibroblast growth factors (FGF)0.00006557Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0.00009385Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0.00009385Direct
Hemopexin-like domain0.0001142Direct
MMP N-terminal domain0.0002921Direct
ets domain0.0002993Direct
VWC domain0.0006053Direct
Ovomucoid domain III-like0.0006053Direct
Proprotein convertase P-domain0.0007199Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cystine-knot cytokines0.000008024Direct
EGF/Laminin0.000008382Direct
Homeodomain-like0.00002315Direct
Kazal-type serine protease inhibitors0.00004894Direct
Growth factor receptor domain0.00006614Direct
Hemopexin-like domain0.00007518Direct
Cytokine0.00007518Direct
Phosphoglycerate mutase-like0.0001886Direct
PGBD-like0.0001886Direct
p53-like transcription factors0.0003021Direct
FnI-like domain0.0003049Direct
Alpha-macroglobulin receptor domain0.0009159Direct
Metalloproteases ("zincins"), catalytic domain0.01458Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0.00007236Direct
    57184,100895
  • 57184 - Growth factor receptor domain
  • 100895 - Kazal-type serine protease inhibitors
  • 0.00007236Direct
    55486,50923
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0.00007667Direct
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.000101Direct
    47090,55486
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 0.0001886Direct
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.0005273Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0007006Direct
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0009159Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0009941Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49899,49899,49899
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.00004595Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0001113Direct
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0003326Direct
    47090,55486,50923
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0.0004569Direct
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0009159Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)