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Xenopus ANatomical entity (XAN): pharyngeal arch

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   head region [XAO:0000040] <4>(178|245) (183|137|58)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + 2:   organism subdivision [XAO:0003013] <11>(375|498) (381|292|126)
+ + 2:   anatomical region [XAO:0003186] <51>(370|484) (374|284|123)
+ 1:   pharyngeal region [XAO:0004261] <7>(19|25) (21|9|6)
+ 1:   head [XAO:0003024] <22>(178|244) (183|137|58)
+ 1:   multi-tissue structure [XAO:0003037] <131>(49|63) (53|31|15)
0:   pharyngeal arch [XAO:0000096] <3>(13|15) (14|3|3)
- 1:   branchial arch [XAO:0000099] <5>(4|4) (4|1|2)
- 1:   hyoid arch [XAO:0000098] <2>(1|1) (1|0|0)
- 1:   mandibular arch [XAO:0000097] <2>(1|2) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Nop domain0Direct
Homeodomain-like0.0000000000001179Direct
RNA-binding domain, RBD0.0000004319Direct
"Winged helix" DNA-binding domain0.0000009274Direct
Cytokine0.000007208Direct
HLH, helix-loop-helix DNA-binding domain0.00001804Direct
Frizzled cysteine-rich domain0.0000255Direct
p53-like transcription factors0.0000844Direct
HMG-box0.0002108Direct
Cystine-knot cytokines0.001143Inherited
Plexin repeat0.04268Inherited
Sema domain0.04325Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog (development protein), N-terminal signaling domain0Direct
RUNT domain0Direct
Nop domain0Direct
Homeodomain0.00000000001171Direct
Forkhead DNA-binding domain0.0000001166Direct
ets domain0.000002359Direct
Canonical RBD0.000002875Direct
Fibroblast growth factors (FGF)0.000003312Direct
Frizzled cysteine-rich domain0.00003784Direct
HLH, helix-loop-helix DNA-binding domain0.00005059Direct
T-box0.0001825Direct
HMG-box0.000367Direct
Transforming growth factor (TGF)-beta0.001361Inherited
Sema domain0.02751Inherited
Plexin repeat0.05039Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Nop domain0Direct
Homeodomain-like0.00000000000008167Direct
RNA-binding domain, RBD0.0000003054Direct
"Winged helix" DNA-binding domain0.0000006583Direct
Cytokine0.000005178Direct
HLH, helix-loop-helix DNA-binding domain0.00001306Direct
Frizzled cysteine-rich domain0.00001852Direct
p53-like transcription factors0.00006213Direct
HMG-box0.0001568Direct
Cystine-knot cytokines0.0008688Direct
P-domain of calnexin/calreticulin0.0009476Direct
Plexin repeat0.03489Inherited
Sema domain0.03535Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.0004724Direct
    49899,63887
  • 49899 - Concanavalin A-like lectins/glucanases
  • 63887 - P-domain of calnexin/calreticulin
  • 0.0009476Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.03535Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.001869Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.009938Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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