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Xenopus ANatomical entity (XAN): germ cell

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   whole organism [XAO:0003004] <12>(449|576) (453|327|143)
+ + 2:   anatomical structure [XAO:0003000] <11>(574|728) (574|396|161)
+ 1:   cell [XAO:0003012] <70>(92|101) (93|35|16)
0:   germ cell [XAO:0000111] <9>(56|61) (57|22|10)
- 1:   oocyte [XAO:0000256] <15>(2|4) (2|1|1)
- 1:   gamete [XAO:0003150] <2>(39|46) (39|14|5)
- 1:   primary oogonium [XAO:0000263](2|3) (2|2|1)
- 1:   primary spermatogonium [XAO:0003018](2|3) (2|2|1)
- 1:   primordial germ cell [XAO:0003149](0|0) (0|0|0)
- 1:   secondary oogonium [XAO:0000268](0|0) (0|0|0)
- 1:   secondary spermatogonium [XAO:0003020](0|0) (0|0|0)
- 1:   spermatid [XAO:0003151](0|0) (0|0|0)
- 1:   spermatocyte [XAO:0003019](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PLP-binding barrel0Direct
eIF1-like0Direct
DNA ligase/mRNA capping enzyme, catalytic domain0Direct
Zn-binding ribosomal proteins0Direct
Translation proteins SH3-like domain0Direct
TK C-terminal domain-like0Direct
Ribosomal protein L10-like0Direct
LysM domain0Direct
Transcription factor IIA (TFIIA), alpha-helical domain0Direct
Nucleoporin domain0Direct
RBP11-like subunits of RNA polymerase0Direct
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex0Direct
PriA/YqbF domain0Direct
Ribulose-phoshate binding barrel0Direct
BSD domain-like0Direct
Mediator hinge subcomplex-like0Direct
Tim10-like0Direct
Zn-finger domain of Sec23/240Direct
Uracil-DNA glycosylase-like0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
SIS domain0Direct
SPOC domain-like0Direct
Nucleoplasmin-like core domain0Direct
Transcription factor IIA (TFIIA), beta-barrel domain0Direct
Translational machinery components0Direct
Nop domain0Direct
PABC (PABP) domain0Direct
G protein-binding domain0Direct
LexA/Signal peptidase0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Surp module (SWAP domain)0Direct
Isocitrate/Isopropylmalate dehydrogenase-like0Direct
Cu,Zn superoxide dismutase-like0Direct
ATP-dependent DNA ligase DNA-binding domain0Direct
E2F-DP heterodimerization region0Direct
DLC0Direct
FAD-dependent thiol oxidase0Direct
PAH2 domain0Direct
Alanine racemase C-terminal domain-like0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
LuxS/MPP-like metallohydrolase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
USP8 N-terminal domain-like0Direct
GINS helical bundle-like0Direct
Cysteine alpha-hairpin motif0Direct
Restriction endonuclease-like0Direct
Sm-like ribonucleoproteins0.00002658Direct
S-adenosyl-L-methionine-dependent methyltransferases0.0001327Direct
Cyclin-like0.0005559Direct
UBC-like0.001538Inherited
ARM repeat0.0101Inherited
RNA-binding domain, RBD0.02462Inherited
Nucleic acid-binding proteins0.04972Inherited
Translation proteins0.4216Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.709Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Eukaryotic ODC-like0Direct
TRASH domain0Direct
Transcription factor IIA (TFIIA), alpha-helical domain0Direct
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex0Direct
Zn-finger domain of Sec23/240Direct
Alpha-adaptin ear subdomain-like0Direct
Transcription factor IIA (TFIIA), beta-barrel domain0Direct
Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain0Direct
Tim10/DDP0Direct
Variant RING domain0Direct
DNA ligase0Direct
TATA-box binding protein (TBP), C-terminal domain0Direct
Phosphoribosylpyrophosphate synthetase-like0Direct
XPF/Rad1/Mus81 nuclease0Direct
Ran-binding domain0Direct
PAH2 domain0Direct
Dimeric isocitrate & isopropylmalate dehydrogenases0Direct
B56-like0Direct
Clathrin adaptor appendage, alpha and beta chain-specific domain0Direct
Translation initiation factor eIF4e0Direct
DLC0Direct
PABC (PABP) domain0Direct
Steroid-binding domain0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
Surp module (SWAP domain)0Direct
Ribosomal protein L18 and S110Direct
S-adenosylhomocystein hydrolase0Direct
MPP-like0Direct
eIF1-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
CAT-like0Direct
LysM domain0Direct
Ubiquitin carboxyl-terminal hydrolase UCH-L0Direct
Protein-L-isoaspartyl O-methyltransferase0Direct
ATP-dependent DNA ligase catalytic domain0Direct
Sedlin (SEDL)0Direct
Protein prenyltransferases0Direct
DNA ligase/mRNA capping enzyme postcatalytic domain0Direct
Alanine racemase-like, N-terminal domain0Direct
Cu,Zn superoxide dismutase-like0Direct
Nop domain0Direct
FAD-dependent thiol oxidase0Direct
Pseudouridine synthase I TruA0Direct
BSD domain0Direct
Hypoxia-inducible factor HIF ihhibitor (FIH1)0Direct
NTF2-like0Direct
E2F dimerization segment0Direct
A20-like zinc finger0Direct
Nucleoplasmin-like core domain0Direct
USP8 N-terminal domain-like0Direct
Cyclin0.000007953Direct
UBC-related0.000008833Direct
WD40-repeat0.00001659Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000347Direct
ARID domain0.0007475Direct
Cold shock DNA-binding domain-like0.001085Inherited
Tudor domain0.002435Inherited
G proteins0.02612Inherited
Canonical RBD0.04245Inherited
Elongation factors0.4838Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.6453Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
The spindle assembly checkpoint protein mad20Direct
Surp module (SWAP domain)0Direct
Transcription factor IIA (TFIIA), beta-barrel domain0Direct
LexA/Signal peptidase0Direct
Mediator hinge subcomplex-like0Direct
Nucleoplasmin-like core domain0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
RBP11-like subunits of RNA polymerase0Direct
LysM domain0Direct
SPOC domain-like0Direct
eIF1-like0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
DLC0Direct
ATP-dependent DNA ligase DNA-binding domain0Direct
Nucleoporin domain0Direct
Cysteine alpha-hairpin motif0Direct
Cu,Zn superoxide dismutase-like0Direct
SIS domain0Direct
Transcription factor IIA (TFIIA), alpha-helical domain0Direct
Alanine racemase C-terminal domain-like0Direct
Ribulose-phoshate binding barrel0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Uracil-DNA glycosylase-like0Direct
PAH2 domain0Direct
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex0Direct
Zn-binding ribosomal proteins0Direct
Restriction endonuclease-like0Direct
Ribosomal protein L10-like0Direct
PABC (PABP) domain0Direct
DNA ligase/mRNA capping enzyme, catalytic domain0Direct
PriA/YqbF domain0Direct
E2F-DP heterodimerization region0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Zn-finger domain of Sec23/240Direct
TK C-terminal domain-like0Direct
Tim10-like0Direct
Isocitrate/Isopropylmalate dehydrogenase-like0Direct
LuxS/MPP-like metallohydrolase0Direct
USP8 N-terminal domain-like0Direct
Translation proteins SH3-like domain0Direct
BSD domain-like0Direct
FAD-dependent thiol oxidase0Direct
GINS helical bundle-like0Direct
Nop domain0Direct
G protein-binding domain0Direct
Translational machinery components0Direct
PLP-binding barrel0Direct
Sm-like ribonucleoproteins0.00001925Direct
S-adenosyl-L-methionine-dependent methyltransferases0.00009759Direct
Cyclin-like0.0004165Direct
ARID-like0.0008038Direct
UBC-like0.001169Inherited
ARM repeat0.007881Inherited
RNA-binding domain, RBD0.01964Inherited
Nucleic acid-binding proteins0.04073Inherited
Translation proteins0.3883Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.6729Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52518,52922
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 52922 - TK C-terminal domain-like
  • 0Direct
    51206,51206
  • 51206 - cAMP-binding domain-like
  • 51206 - cAMP-binding domain-like
  • 0Direct
    63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0Direct
    57424,57184
  • 57424 - LDL receptor-like module
  • 57184 - Growth factor receptor domain
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    56091,50249
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    51230,47005
  • 51230 - Single hybrid motif
  • 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    117018,56091
  • 117018 - ATP-dependent DNA ligase DNA-binding domain
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 0Direct
    57924,57924
  • 57924 - Inhibitor of apoptosis (IAP) repeat
  • 57924 - Inhibitor of apoptosis (IAP) repeat
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    55945,55945
  • 55945 - TATA-box binding protein-like
  • 55945 - TATA-box binding protein-like
  • 0Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0Direct
    47005,52777
  • 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
  • 52777 - CoA-dependent acyltransferases
  • 0Direct
    46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    54236,57889
  • 54236 - Ubiquitin-like
  • 57889 - Cysteine-rich domain
  • 0Direct
    48371,46785
  • 48371 - ARM repeat
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000001043Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.2815Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.5135Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.6729Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    103657,50729,48350
  • 103657 - BAR/IMD domain-like
  • 50729 - PH domain-like
  • 48350 - GTPase activation domain, GAP
  • 0Direct
    54768,54768,54768
  • 54768 - dsRNA-binding domain-like
  • 54768 - dsRNA-binding domain-like
  • 54768 - dsRNA-binding domain-like
  • 0Direct
    90229,90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0Direct
    117018,56091,50249
  • 117018 - ATP-dependent DNA ligase DNA-binding domain
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    50249,50249,50249
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    54791,54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    57424,57424,57184
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57184 - Growth factor receptor domain
  • 0Direct
    51230,47005,52777
  • 51230 - Single hybrid motif
  • 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
  • 52777 - CoA-dependent acyltransferases
  • 0Direct
    57424,57184,63825
  • 57424 - LDL receptor-like module
  • 57184 - Growth factor receptor domain
  • 63825 - YWTD domain
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.6729Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)