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Xenopus ANatomical entity (XAN): eye

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(574|728) (574|396|161)
+ + + + 4:   anatomical group [XAO:0003001] <2>(372|480) (379|295|130)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   whole organism [XAO:0003004] <12>(448|575) (454|327|143)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(435|562) (438|323|141)
+ + + 3:   anatomical region [XAO:0003186] <43>(371|485) (375|286|122)
+ + + 3:   anatomical system [XAO:0003002] <19>(237|329) (246|189|86)
+ + 2:   nervous system [XAO:0000177] <11>(136|202) (143|113|51)
+ + 2:   compound organ [XAO:0003041] <8>(333|444) (338|276|123)
+ + 2:   head region [XAO:0000040] <4>(177|248) (182|140|57)
+ + 2:   organism subdivision [XAO:0003013] <11>(375|497) (382|292|125)
+ + 2:   sensory system [XAO:0003194] <5>(37|50) (42|25|10)
+ 1:   central nervous system [XAO:0000215] <7>(131|193) (136|108|47)
+ 1:   head [XAO:0003024] <22>(177|247) (182|140|57)
+ 1:   visual system [XAO:0003198] <5>(24|35) (28|16|7)
+ 1:   cavitated compound organ [XAO:0003165] <23>(287|393) (292|247|112)
0:   eye [XAO:0000179] <16>(22|29) (25|14|6)
- 1:   retina [XAO:0000009] <6>(9|15) (10|9|2)
- 1:   lens [XAO:0000008] <3>(2|2) (2|0|0)
- 1:   choroid [XAO:0004460](0|0) (0|0|0)
- 1:   choroid fissure [XAO:0000474](0|0) (0|0|0)
- 1:   ciliary body [XAO:0000186](0|0) (0|0|0)
- 1:   conjunctiva [XAO:0000182](0|0) (0|0|0)
- 1:   cornea [XAO:0000180](0|0) (0|0|0)
- 1:   globe [XAO:0000181](0|0) (0|0|0)
- 1:   iris [XAO:0000185](0|0) (0|0|0)
- 1:   left eye [XAO:0005256](0|0) (0|0|0)
- 1:   lower eyelid [XAO:0000007](0|0) (0|0|0)
- 1:   optic disc [XAO:0005066](2|2) (2|0|0)
- 1:   optic nerve [XAO:0000188](2|3) (3|0|0)
- 1:   pupil [XAO:0000283](0|0) (0|0|0)
- 1:   right eye [XAO:0005257](0|0) (0|0|0)
- 1:   sclera [XAO:0000183](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Guanido kinase N-terminal domain0Direct
Nop domain0Direct
Hedgehog/DD-peptidase0Direct
14-3-3 protein0Direct
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
Homeodomain-like0.000000000000001567Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000004843Direct
Cytokine0.000000001521Direct
"Winged helix" DNA-binding domain0.0000002239Direct
Frizzled cysteine-rich domain0.000006733Direct
RNA-binding domain, RBD0.00004691Direct
PYP-like sensor domain (PAS domain)0.0001304Direct
Orange domain-like0.0001489Direct
Zn-binding ribosomal proteins0.0001872Direct
SMAD MH1 domain0.0001872Direct
gamma-Crystallin-like0.01866Inherited
Intermediate filament protein, coiled coil region0.03732Inherited
Fibronectin type III0.2848Inherited
Voltage-gated potassium channels0.6094Inherited
POZ domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Guanido kinase N-terminal domain0Direct
14-3-3 protein0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Arrestin/Vps26-like0Direct
Guanido kinase catalytic domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Nop domain0Direct
PAS domain of steroid receptor coactivator 1A, NCo-A10Direct
Synuclein0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000002427Direct
Homeodomain0.000000000001498Direct
Fibroblast growth factors (FGF)0.000000009328Direct
Forkhead DNA-binding domain0.000004366Direct
Frizzled cysteine-rich domain0.000009296Direct
SMAD domain0.00004736Direct
Hairy Orange domain0.0001574Direct
SMAD MH1 domain0.0001925Direct
Canonical RBD0.000311Direct
Sema domain0.0009339Direct
I set domains0.002818Inherited
Crystallins/Ca-binding development proteins0.01913Inherited
POU-specific domain0.03451Inherited
Intermediate filament protein, coiled coil region0.0433Inherited
Fibronectin type III0.3307Inherited
Higher-molecular-weight phosphotyrosine protein phosphatases0.3798Inherited
Tetramerization domain of potassium channels0.6293Inherited
Voltage-gated potassium channels0.8524Inherited
Rhodopsin-like1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nop domain0Direct
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
Guanido kinase N-terminal domain0Direct
Synuclein0Direct
Hedgehog/DD-peptidase0Direct
14-3-3 protein0Direct
Homeodomain-like0.000000000000001076Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000003331Direct
Cytokine0.000000001056Direct
"Winged helix" DNA-binding domain0.0000001571Direct
Frizzled cysteine-rich domain0.000004813Direct
RNA-binding domain, RBD0.00003412Direct
PYP-like sensor domain (PAS domain)0.0000959Direct
Orange domain-like0.0001097Direct
Zn-binding ribosomal proteins0.0001384Direct
SMAD MH1 domain0.0001384Direct
HMG-box0.0009393Direct
gamma-Crystallin-like0.01475Inherited
Intermediate filament protein, coiled coil region0.03019Inherited
Immunoglobulin0.1137Inherited
Fibronectin type III0.2567Inherited
Galactose-binding domain-like0.4553Inherited
Voltage-gated potassium channels0.5733Inherited
POZ domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0001097Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0002736Direct
    55785,55785
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.000434Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.0163Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.03804Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.06089Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.06099Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.06284Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.09897Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00002576Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0001097Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.03027Inherited
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.03397Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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