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Xenopus ANatomical entity (XAN): optic vesicle

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical group [XAO:0003001] <2>(425|543) (426|312|134)
+ + + 3:   nervous system [XAO:0000177] <10>(135|201) (138|112|53)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical system [XAO:0003002] <19>(301|396) (304|208|92)
+ + 2:   anatomical structure [XAO:0003000] <11>(574|729) (574|397|164)
+ + 2:   embryo [XAO:0000113] <8>(128|178) (128|88|35)
+ + 2:   sensory system [XAO:0003194] <5>(40|54) (44|29|13)
+ + 2:   whole organism [XAO:0003004] <12>(471|606) (473|338|146)
+ 1:   visual system [XAO:0003198] <5>(27|34) (29|16|8)
+ 1:   embryonic structure [XAO:0003042] <57>(44|58) (45|30|13)
0:   optic vesicle [XAO:0000228] <2>(4|9) (5|3|1)
- 1:   pigment layer [XAO:0000261](0|0) (0|0|0)
- 1:   retinal layer [XAO:0000266](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.0000007134Direct
Frizzled cysteine-rich domain0.0001647Direct
F-box domain0.0007822Direct
HMG-box0.01831Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Noggin0Direct
P4 origin-binding domain-like0.00000004126Direct
HLH, helix-loop-helix DNA-binding domain0.000001347Direct
Frizzled cysteine-rich domain0.0001851Direct
I set domains0.0003622Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0.000784Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0.000784Direct
F-box domain0.0008748Direct
HMG-box0.01996Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.0000005089Direct
Frizzled cysteine-rich domain0.0001227Direct
F-box domain0.0005942Direct
Homeodomain-like0.0009231Direct
HMG-box0.01459Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0.0006405Direct
    57850,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 0.0006405Direct
    46689,46689
  • 46689 - Homeodomain-like
  • 46689 - Homeodomain-like
  • 0.0007474Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0006405Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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