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Xenopus ANatomical entity (XAN): cranial neural crest

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   primary germ layer [XAO:0003011] <4>(109|155) (109|73|30)
+ + + 3:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   ectoderm [XAO:0000001] <15>(62|85) (62|43|11)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + 2:   neuroectoderm [XAO:0000042] <9>(27|31) (27|15|5)
+ 1:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
+ 1:   neural crest [XAO:0000048] <8>(12|15) (12|6|2)
0:   cranial neural crest [XAO:0001001] <3>(7|11) (7|4|1)
- 1:   branchial crest [XAO:0000026] <2>(3|4) (3|2|1)
- 1:   hyoid crest [XAO:0000025](4|4) (4|0|0)
- 1:   mandibular crest [XAO:0000024](1|1) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.0000000000001625Direct
Sema domain0.000007422Direct
Cytokine0.00001556Direct
"Winged helix" DNA-binding domain0.00005506Direct
Plexin repeat0.00007931Direct
HMG-box0.000143Direct
HLH, helix-loop-helix DNA-binding domain0.01098Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.000000000007103Direct
Sema domain0.000002865Direct
Fibroblast growth factors (FGF)0.000009459Direct
Plexin repeat0.0001131Direct
HMG-box0.0001947Direct
Glutathione peroxidase-like0.0002623Direct
Paired domain0.0004789Direct
Arginine methyltransferase0.0004937Direct
P4 origin-binding domain-like0.001738Inherited
Ephrin receptor ligand binding domain0.001997Inherited
HLH, helix-loop-helix DNA-binding domain0.01459Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.0000000000001126Direct
Sema domain0.000005336Direct
Cytokine0.00001124Direct
"Winged helix" DNA-binding domain0.00004035Direct
Plexin repeat0.00005837Direct
HMG-box0.0001058Direct
HLH, helix-loop-helix DNA-binding domain0.008621Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.000005336Direct
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0000438Direct
    81383,52047
  • 81383 - F-box domain
  • 52047 - RNI-like
  • 0.0001799Direct
    56112,47769
  • 56112 - Protein kinase-like (PK-like)
  • 47769 - SAM/Pointed domain
  • 0.0007775Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0000438Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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