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Xenopus ANatomical entity (XAN): embryonic structure

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Xenopus anatomical entity [XAO:0000000] <9>
+ 1:   embryo [XAO:0000113] <8>(128|178) (128|88|35)
+ 1:   anatomical structure [XAO:0003000] <11>(574|729) (574|397|164)
+ 1:   whole organism [XAO:0003004] <12>(471|606) (473|338|146)
0:   embryonic structure [XAO:0003042] <57>(44|58) (45|30|13)
- 1:   primordium [XAO:0003043] <20>(8|9) (8|2|0)
- 1:   marginal zone [XAO:0000068] <8>(8|13) (9|7|3)
- 1:   foregut [XAO:0000232] <7>(7|11) (8|1|0)
- 1:   lateral plate mesoderm [XAO:0000311] <6>(12|14) (12|4|2)
- 1:   visceral pouch [XAO:0000282] <6>(3|3) (3|0|0)
- 1:   neural tube [XAO:0003204] <5>(5|7) (5|0|3)
- 1:   cranial placode [XAO:0000305] <3>(12|14) (13|6|1)
- 1:   animal cap [XAO:0000036] <2>(1|1) (1|1|0)
- 1:   blastopore lip [XAO:0000078] <2>(2|6) (3|2|0)
- 1:   circumblastoporal collar [XAO:0000082] <2>(8|7) (8|2|1)
- 1:   optic vesicle [XAO:0000228] <2>(4|9) (5|3|1)
- 1:   presomitic mesoderm [XAO:0000057] <2>(2|5) (2|1|2)
- 1:   anterior dorsal lateral plate region [XAO:0003051] <1>(6|8) (6|3|1)
- 1:   axial mesoderm [XAO:0000205] <1>(6|4) (6|1|0)
- 1:   blastopore [XAO:0000208] <1>(2|6) (3|2|0)
- 1:   hatching gland [XAO:0000034] <1>(0|0) (0|0|0)
- 1:   hindgut [XAO:0000104] <1>(4|5) (4|0|0)
- 1:   paraxial mesoderm [XAO:0000259] <1>(3|6) (3|2|2)
- 1:   Brachet's cleft [XAO:0004456](0|0) (0|0|0)
- 1:   Rathke's pouch [XAO:0000430](0|0) (0|0|0)
- 1:   anterior foregut [XAO:0005127](0|0) (0|0|0)
- 1:   anterior neural tube [XAO:0000307](1|2) (1|0|0)
- 1:   cardiac mesoderm [XAO:0000235](2|4) (2|1|0)
- 1:   caudal presomitic mesoderm [XAO:0004619](2|2) (2|0|0)
- 1:   choroid fissure [XAO:0000474](0|0) (0|0|0)
- 1:   circumpharyngeal ridge [XAO:0004461](0|0) (0|0|0)
- 1:   cleavage furrow [XAO:0004492](0|0) (0|0|0)
- 1:   dorsal endoderm [XAO:0004462](0|0) (0|0|0)
- 1:   dorsal foregut [XAO:0005126](0|0) (0|0|0)
- 1:   dorsal lateral plate mesoderm [XAO:0004509](1|2) (1|1|0)
- 1:   dorsolateral neural tube [XAO:0004617](0|0) (0|0|0)
- 1:   endocardial tube [XAO:0000337](1|1) (1|0|0)
- 1:   glomeral mesenchyme [XAO:0000110](0|0) (0|0|0)
- 1:   hypobranchial placode [XAO:0000324](0|0) (0|0|0)
- 1:   lateral nasal prominence [XAO:0005193](0|0) (0|0|0)
- 1:   liver diverticulum [XAO:0000101](2|1) (2|1|0)
- 1:   lower blastopore lip [XAO:0000089](1|2) (2|0|0)
- 1:   medial nasal prominence [XAO:0005194](0|0) (0|0|0)
- 1:   midgut [XAO:0000103](3|3) (3|0|0)
- 1:   oral evagination [XAO:0000257](0|0) (0|0|0)
- 1:   posterior foregut [XAO:0005128](0|0) (0|0|0)
- 1:   posterior neural tube [XAO:0000250](1|2) (1|0|0)
- 1:   prechordal plate [XAO:0000079](4|3) (4|1|0)
- 1:   presumptive axial mesoderm [XAO:0004406](0|0) (0|0|0)
- 1:   presumptive ectoderm [XAO:0004132](0|0) (0|0|0)
- 1:   presumptive midbrain-hindbrain boundary [XAO:0004086](5|5) (5|2|0)
- 1:   presumptive paraxial mesoderm [XAO:0004134](1|2) (1|0|0)
- 1:   presumptive rhombomere [XAO:0005026](1|1) (1|1|0)
- 1:   rostral presomitic mesoderm [XAO:0004618](0|0) (0|0|0)
- 1:   somatic layer of lateral plate mesoderm [XAO:0000271](0|0) (0|0|0)
- 1:   splanchnic layer of lateral plate mesoderm [XAO:0000276](1|1) (1|1|1)
- 1:   trunk placode [XAO:0000461](0|0) (0|0|0)
- 1:   upper blastopore lip [XAO:0000088](1|4) (1|2|0)
- 1:   vegetal endoderm [XAO:0004066](1|1) (1|0|0)
- 1:   ventral foregut [XAO:0005125](0|0) (0|0|0)
- 1:   ventral mesoderm [XAO:0004473](3|2) (3|0|0)
- 1:   ventrolateral neural tube [XAO:0004616](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
PLP-binding barrel0Direct
Hedgehog/DD-peptidase0Direct
Homeodomain-like0Direct
PriA/YqbF domain0Direct
14-3-3 protein0Direct
Synuclein0Direct
Cysteine-rich DNA binding domain, (DM domain)0Direct
Alanine racemase C-terminal domain-like0Direct
SRF-like0Direct
"Winged helix" DNA-binding domain0.000000000000003662Direct
HLH, helix-loop-helix DNA-binding domain0.000000000000004392Direct
RNA-binding domain, RBD0.0000000003309Direct
Cytokine0.0000001325Direct
Frizzled cysteine-rich domain0.0000003656Direct
HMG-box0.00004549Direct
Cystine-knot cytokines0.0002027Direct
Sema domain0.0003469Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0005736Direct
SAP domain0.0007387Direct
Snake toxin-like0.001633Inherited
Orange domain-like0.002631Inherited
p53-like transcription factors0.004406Inherited
Plexin repeat0.006891Inherited
lambda repressor-like DNA-binding domains0.01508Inherited
GroEL-intermediate domain like0.02065Inherited
GroEL equatorial domain-like0.02065Inherited
GroEL apical domain-like0.0447Inherited
beta-beta-alpha zinc fingers0.09127Inherited
F-box domain0.1713Inherited
EGF/Laminin0.1776Inherited
Transducin (alpha subunit), insertion domain0.1807Inherited
Alpha-macroglobulin receptor domain0.1925Inherited
TIMP-like0.208Inherited
Kazal-type serine protease inhibitors0.2288Inherited
FnI-like domain0.2588Inherited
Tropomyosin0.2588Inherited
DNA-binding domain0.337Inherited
Protein kinase-like (PK-like)0.3744Inherited
Globin-like0.4261Inherited
Terpenoid cyclases/Protein prenyltransferases0.5167Inherited
LDL receptor-like module0.6314Inherited
Nuclear receptor ligand-binding domain0.6418Inherited
E set domains0.9133Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Alanine racemase-like, N-terminal domain0Direct
Troponin I0Direct
Guanido kinase N-terminal domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Synuclein0Direct
Ran-binding domain0Direct
Extracellular domain of cell surface receptors0Direct
SRF-like0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
14-3-3 protein0Direct
SH3BGR (SH3-binding, glutamic acid-rich protein-like)0Direct
Eukaryotic ODC-like0Direct
Pointed domain0Direct
Cysteine-rich DNA binding domain, (DM domain)0Direct
Homeodomain0Direct
Fibroblast growth factors (FGF)0Direct
Noggin0Direct
Guanido kinase catalytic domain0Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000002443Direct
Forkhead DNA-binding domain0.0000000000001463Direct
Canonical RBD0.00000000002004Direct
ets domain0.0000000179Direct
Transforming growth factor (TGF)-beta0.0000003984Direct
Frizzled cysteine-rich domain0.0000005202Direct
HMG-box0.0000745Direct
Sema domain0.0001734Direct
POU-specific domain0.0005725Direct
SAP domain0.0008643Direct
LIM domain0.001612Inherited
T-box0.001808Inherited
Hairy Orange domain0.0027Inherited
P4 origin-binding domain-like0.003989Inherited
Plexin repeat0.008539Inherited
Erythroid transcription factor GATA-10.0178Inherited
Actin/HSP700.01944Inherited
VWC domain0.04226Inherited
Glutathione peroxidase-like0.04226Inherited
Paired domain0.0459Inherited
Group II chaperonin (CCT, TRIC), apical domain0.0459Inherited
Ubiquitin-related0.06971Inherited
Class I aldolase0.09645Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.09645Inherited
Tandem AAA-ATPase domain0.0974Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.09842Inherited
Classic zinc finger, C2H20.1391Inherited
Tropomyosin0.1408Inherited
Transducin (alpha subunit), insertion domain0.1863Inherited
Alpha-macroglobulin receptor domain0.19Inherited
F-box domain0.1966Inherited
AAT-like0.2508Inherited
Complement components0.2937Inherited
Link domain0.4004Inherited
Globins0.4316Inherited
Nuclear receptor0.5043Inherited
LDL receptor-like module0.6564Inherited
Nuclear receptor ligand-binding domain0.6809Inherited
I set domains0.7993Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Synuclein0Direct
14-3-3 protein0Direct
PriA/YqbF domain0Direct
PLP-binding barrel0Direct
Guanido kinase N-terminal domain0Direct
Alanine racemase C-terminal domain-like0Direct
SRF-like0Direct
Hedgehog/DD-peptidase0Direct
Cysteine-rich DNA binding domain, (DM domain)0Direct
Homeodomain-like0Direct
"Winged helix" DNA-binding domain0.000000000000002552Direct
HLH, helix-loop-helix DNA-binding domain0.000000000000003061Direct
RNA-binding domain, RBD0.0000000002325Direct
Cytokine0.00000009405Direct
Frizzled cysteine-rich domain0.0000002602Direct
HMG-box0.00003343Direct
Cystine-knot cytokines0.0001516Direct
Sema domain0.0002607Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0004337Direct
SAP domain0.0005605Direct
Snake toxin-like0.001251Inherited
Orange domain-like0.002032Inherited
p53-like transcription factors0.003422Inherited
Plexin repeat0.005402Inherited
Eukaryotic type KH-domain (KH-domain type I)0.008494Inherited
lambda repressor-like DNA-binding domains0.01198Inherited
GroEL equatorial domain-like0.01649Inherited
GroEL-intermediate domain like0.01649Inherited
GroEL apical domain-like0.03651Inherited
beta-beta-alpha zinc fingers0.07715Inherited
F-box domain0.1503Inherited
EGF/Laminin0.1561Inherited
Transducin (alpha subunit), insertion domain0.1589Inherited
Alpha-macroglobulin receptor domain0.1701Inherited
TIMP-like0.1847Inherited
Kazal-type serine protease inhibitors0.2047Inherited
Tropomyosin0.2326Inherited
FnI-like domain0.2326Inherited
DNA-binding domain0.3077Inherited
Protein kinase-like (PK-like)0.3441Inherited
Globin-like0.3936Inherited
Terpenoid cyclases/Protein prenyltransferases0.4825Inherited
LDL receptor-like module0.597Inherited
Nuclear receptor ligand-binding domain0.6075Inherited
E set domains0.886Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    53223,51735
  • 53223 - Aminoacid dehydrogenase-like, N-terminal domain
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0Direct
    49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0000003178Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00003037Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0002607Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.002032Inherited
    90209,90209
  • 90209 - Ran binding protein zinc finger-like
  • 90209 - Ran binding protein zinc finger-like
  • 0.009559Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.01452Inherited
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.01452Inherited
    57440,57440
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 0.01452Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.01476Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0381Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.05517Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.06328Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.07948Inherited
    57850,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 0.08355Inherited
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.1266Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1579Inherited
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1589Inherited
    46689,46689
  • 46689 - Homeodomain-like
  • 46689 - Homeodomain-like
  • 0.2186Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.2403Inherited
    49854,49854
  • 49854 - Spermadhesin, CUB domain
  • 49854 - Spermadhesin, CUB domain
  • 0.2818Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.4091Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.6222Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,49854,57196
  • 57196 - EGF/Laminin
  • 49854 - Spermadhesin, CUB domain
  • 57196 - EGF/Laminin
  • 0Direct
    103647,103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0Direct
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    47220,47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0Direct
    49854,49854,57196
  • 49854 - Spermadhesin, CUB domain
  • 49854 - Spermadhesin, CUB domain
  • 57196 - EGF/Laminin
  • 0Direct
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.003176Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.01452Inherited
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.01452Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.03651Inherited
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.03651Inherited
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.08355Inherited
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.08699Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.9999Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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