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Xenopus ANatomical entity (XAN): primordium

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   whole organism [XAO:0003004] <12>(462|598) (466|335|145)
+ + 2:   embryo [XAO:0000113] <8>(134|184) (135|89|38)
+ + 2:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ 1:   embryonic structure [XAO:0003042] <58>(42|53) (44|27|13)
0:   primordium [XAO:0003043] <20>(7|13) (8|2|0)
- 1:   heart primordium [XAO:0000336] <1>(0|3) (0|0|0)
- 1:   lateral line primordium [XAO:0004411] <1>(0|0) (0|0|0)
- 1:   blastocoel anlage [XAO:0000206](0|0) (0|0|0)
- 1:   cement gland primordium [XAO:0000049](1|1) (1|0|0)
- 1:   dorsal pancreatic bud [XAO:0000467](0|0) (0|0|0)
- 1:   eye primordium [XAO:0000227](3|2) (3|1|0)
- 1:   first pancreatic bud [XAO:0001101](0|0) (0|0|0)
- 1:   foregut endoderm [XAO:0004513](0|1) (0|0|0)
- 1:   gall bladder primordium [XAO:0004205](0|0) (0|0|0)
- 1:   gill primordium [XAO:0000448](0|0) (0|0|0)
- 1:   hatching gland primordium [XAO:0004394](0|0) (0|0|0)
- 1:   hindgut primordium [XAO:0004511](0|0) (0|0|0)
- 1:   hypophyseal primordium [XAO:0000267](0|1) (0|0|0)
- 1:   laryngeal muscle primordium [XAO:0004448](0|0) (0|0|0)
- 1:   left-right organizer primordium [XAO:0005169](0|0) (0|0|0)
- 1:   liver primordium [XAO:0003266](2|2) (2|0|0)
- 1:   midgut primordium [XAO:0004512](0|0) (0|0|0)
- 1:   rhombic lip [XAO:0004135](0|0) (0|0|0)
- 1:   right spleen primordium [XAO:0000327](0|0) (0|0|0)
- 1:   stomodeal-hypophyseal primordium [XAO:0000032](3|3) (3|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Frizzled cysteine-rich domain0.00000002107Direct
Homeodomain-like0.0000002242Direct
HLH, helix-loop-helix DNA-binding domain0.001155Inherited
TIMP-like0.006178Inherited
Mannose 6-phosphate receptor domain0.007814Inherited
DNA-binding domain0.01275Inherited
Plexin repeat0.1164Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Noggin0Direct
Frizzled cysteine-rich domain0.00000003021Direct
Erythroid transcription factor GATA-10.000004052Direct
Homeodomain0.000008028Direct
Paired domain0.00001496Direct
Class I aldolase0.000151Direct
HLH, helix-loop-helix DNA-binding domain0.001826Inherited
Glutathione peroxidase-like0.002039Inherited
Mannose 6-phosphate receptor domain0.007306Inherited
T-box0.009779Inherited
Fibroblast growth factors (FGF)0.04612Inherited
Transforming growth factor (TGF)-beta0.05279Inherited
Plexin repeat0.1207Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Frizzled cysteine-rich domain0.00000001482Direct
Homeodomain-like0.0000001587Direct
p53-like transcription factors0.0008492Direct
HLH, helix-loop-helix DNA-binding domain0.0008793Direct
TIMP-like0.00481Inherited
Mannose 6-phosphate receptor domain0.006109Inherited
DNA-binding domain0.01004Inherited
Plexin repeat0.09951Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.001349Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.3679Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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