SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): skeletal system

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(462|598) (465|335|145)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + 2:   anatomical group [XAO:0003001] <2>(415|530) (418|309|134)
+ 1:   anatomical system [XAO:0003002] <19>(284|382) (289|204|93)
+ 1:   musculoskeletal system [XAO:0000168] <2>(44|60) (47|28|16)
0:   skeletal system [XAO:0003060] <3>(17|17) (17|7|4)
- 1:   cranium [XAO:0003075] <14>(5|9) (5|3|1)
- 1:   skeleton [XAO:0004053] <3>(13|9) (13|4|2)
- 1:   articular system [XAO:0004274] <1>(0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
F1F0 ATP synthase subunit C0Direct
Zn-binding ribosomal proteins0.0004373Direct
Translation proteins SH3-like domain0.001036Inherited
Actin depolymerizing proteins0.001144Inherited
Thioredoxin-like0.001377Inherited
LDH C-terminal domain-like0.001977Inherited
Spectrin repeat0.003963Inherited
Annexin0.005145Inherited
UBC-like0.01988Inherited
p53-like transcription factors0.02864Inherited
Homeodomain-like0.03841Inherited
HMG-box0.04897Inherited
Cytokine0.181Inherited
HLH, helix-loop-helix DNA-binding domain0.348Inherited
Cystine-knot cytokines0.9727Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RUNT domain0Direct
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
F1F0 ATP synthase subunit C0Direct
DJ-1/PfpI0Direct
LIM domain0.0004108Direct
Linker histone H1/H50.002044Inherited
Lactate & malate dehydrogenases, C-terminal domain0.002044Inherited
LDH N-terminal domain-like0.002044Inherited
Glutathione peroxidase-like0.00287Inherited
Spectrin repeat0.004786Inherited
Homeodomain0.04401Inherited
Paired domain0.04613Inherited
HMG-box0.06418Inherited
Extracellular domain of cell surface receptors0.06603Inherited
Fibroblast growth factors (FGF)0.1517Inherited
Forkhead DNA-binding domain0.2242Inherited
HLH, helix-loop-helix DNA-binding domain0.4342Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
F1F0 ATP synthase subunit C0Direct
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Zn-binding ribosomal proteins0.0003284Direct
Translation proteins SH3-like domain0.0007865Direct
Actin depolymerizing proteins0.0008694Direct
Thioredoxin-like0.001049Inherited
LDH C-terminal domain-like0.001513Inherited
Spectrin repeat0.003057Inherited
Annexin0.003989Inherited
UBC-like0.01575Inherited
p53-like transcription factors0.02299Inherited
Homeodomain-like0.03121Inherited
HMG-box0.0402Inherited
Cytokine0.1588Inherited
HLH, helix-loop-helix DNA-binding domain0.3175Inherited
Cystine-knot cytokines0.9461Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00052Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0008694Direct
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0.001513Inherited
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0.001513Inherited
    46966,47473
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.001513Inherited
    48726,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 0.006671Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.9755Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0005054Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0008745Direct
    46966,46966,47473
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.001513Inherited
    48726,56436,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.006671Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)