SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): skeletal system

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(448|575) (454|327|143)
+ + + 3:   anatomical structure [XAO:0003000] <11>(574|728) (574|396|161)
+ + 2:   anatomical group [XAO:0003001] <2>(372|480) (379|295|130)
+ 1:   musculoskeletal system [XAO:0000168] <2>(44|60) (46|26|15)
+ 1:   anatomical system [XAO:0003002] <19>(237|329) (246|189|86)
0:   skeletal system [XAO:0003060] <3>(16|17) (17|7|4)
- 1:   cranium [XAO:0003075] <14>(5|9) (5|3|1)
- 1:   skeleton [XAO:0004053] <3>(12|9) (13|4|2)
- 1:   articular system [XAO:0004274] <1>(0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
F1F0 ATP synthase subunit C0Direct
Actin depolymerizing proteins0.0006798Direct
Translation proteins SH3-like domain0.00105Inherited
Thioredoxin-like0.001523Inherited
LDH C-terminal domain-like0.002177Inherited
Zn-binding ribosomal proteins0.002587Inherited
Spectrin repeat0.004711Inherited
Annexin0.005775Inherited
p53-like transcription factors0.02877Inherited
Homeodomain-like0.03573Inherited
HMG-box0.0563Inherited
Cytokine0.1907Inherited
HLH, helix-loop-helix DNA-binding domain0.3168Inherited
Cystine-knot cytokines0.9554Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
F1F0 ATP synthase subunit C0Direct
DJ-1/PfpI0Direct
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
RUNT domain0Direct
LIM domain0.0005393Direct
LDH N-terminal domain-like0.002267Inherited
Lactate & malate dehydrogenases, C-terminal domain0.002267Inherited
Linker histone H1/H50.002267Inherited
Glutathione peroxidase-like0.002926Inherited
Spectrin repeat0.005731Inherited
Homeodomain0.04181Inherited
Paired domain0.04999Inherited
Extracellular domain of cell surface receptors0.07003Inherited
HMG-box0.07474Inherited
Fibroblast growth factors (FGF)0.1619Inherited
Forkhead DNA-binding domain0.2246Inherited
HLH, helix-loop-helix DNA-binding domain0.4039Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Subunits of heterodimeric actin filament capping protein Capz0Direct
F1F0 ATP synthase subunit C0Direct
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
Actin depolymerizing proteins0.0005108Direct
Translation proteins SH3-like domain0.0007942Direct
Thioredoxin-like0.001159Inherited
LDH C-terminal domain-like0.001664Inherited
Zn-binding ribosomal proteins0.001982Inherited
Spectrin repeat0.003634Inherited
Annexin0.004475Inherited
UBC-like0.01889Inherited
p53-like transcription factors0.02303Inherited
Homeodomain-like0.02885Inherited
HMG-box0.04634Inherited
Cytokine0.168Inherited
HLH, helix-loop-helix DNA-binding domain0.2871Inherited
Cystine-knot cytokines0.9288Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0006817Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.001036Inherited
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0.001664Inherited
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0.001664Inherited
    46966,47473
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.001664Inherited
    48726,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 0.007182Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0005108Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.001018Inherited
    46966,46966,47473
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.001664Inherited
    48726,56436,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.007182Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)