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Xenopus ANatomical entity (XAN): visual system

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical structure [XAO:0003000] <11>(574|729) (574|397|164)
+ + + + 4:   whole organism [XAO:0003004] <12>(470|604) (472|338|146)
+ + + 3:   anatomical group [XAO:0003001] <2>(425|541) (426|310|134)
+ + 2:   nervous system [XAO:0000177] <10>(135|200) (138|110|53)
+ + 2:   anatomical system [XAO:0003002] <19>(302|394) (305|206|92)
+ 1:   sensory system [XAO:0003194] <5>(40|53) (43|26|13)
0:   visual system [XAO:0003198] <5>(27|33) (29|14|8)
- 1:   eye [XAO:0000179] <15>(24|28) (26|12|7)
- 1:   optic vesicle [XAO:0000228] <2>(4|8) (4|3|1)
- 1:   Stirnorgan [XAO:0001012](0|0) (0|0|0)
- 1:   eye primordium [XAO:0000227](3|3) (3|0|0)
- 1:   pineal gland [XAO:0000160](1|2) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PriA/YqbF domain0Direct
Guanido kinase N-terminal domain0Direct
Hedgehog/DD-peptidase0Direct
14-3-3 protein0Direct
Nop domain0Direct
Synuclein0Direct
SMAD MH1 domain0.0001129Direct
Zn-binding ribosomal proteins0.0001129Direct
PYP-like sensor domain (PAS domain)0.0001211Direct
Orange domain-like0.0001729Direct
lambda repressor-like DNA-binding domains0.03784Inherited
gamma-Crystallin-like0.05512Inherited
DNA-binding domain0.1209Inherited
RNA-binding domain, RBD0.1608Inherited
HLH, helix-loop-helix DNA-binding domain0.2932Inherited
Cupredoxins0.3073Inherited
F-box domain0.4451Inherited
Galactose-binding domain-like0.4451Inherited
Cytokine0.4762Inherited
"Winged helix" DNA-binding domain0.6538Inherited
Voltage-gated potassium channels0.7485Inherited
Frizzled cysteine-rich domain0.8282Inherited
Intermediate filament protein, coiled coil region0.8831Inherited
E set domains0.905Inherited
HMG-box0.924Inherited
POZ domain1Inherited
Homeodomain-like1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Noggin0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Synuclein0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Nop domain0Direct
Arrestin/Vps26-like0Direct
Guanido kinase N-terminal domain0Direct
PAS domain of steroid receptor coactivator 1A, NCo-A10Direct
Guanido kinase catalytic domain0Direct
14-3-3 protein0Direct
SMAD domain0.00002675Direct
SMAD MH1 domain0.0001169Direct
Hairy Orange domain0.0001858Direct
Extracellular domain of cell surface receptors0.0005051Direct
P4 origin-binding domain-like0.0005051Direct
POU-specific domain0.009161Inherited
Glutathione peroxidase-like0.02347Inherited
Crystallins/Ca-binding development proteins0.05606Inherited
Ephrin ectodomain0.06822Inherited
Canonical RBD0.0855Inherited
I set domains0.2302Inherited
HLH, helix-loop-helix DNA-binding domain0.2476Inherited
Fibroblast growth factors (FGF)0.4623Inherited
Forkhead DNA-binding domain0.5382Inherited
Voltage-gated potassium channels0.5618Inherited
Higher-molecular-weight phosphotyrosine protein phosphatases0.6412Inherited
Tetramerization domain of potassium channels0.7767Inherited
Frizzled cysteine-rich domain0.784Inherited
LIM domain0.8415Inherited
Intermediate filament protein, coiled coil region0.8415Inherited
HMG-box0.8833Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PriA/YqbF domain0Direct
Nop domain0Direct
Hedgehog/DD-peptidase0Direct
14-3-3 protein0Direct
Synuclein0Direct
Guanido kinase N-terminal domain0Direct
SMAD MH1 domain0.00008366Direct
Zn-binding ribosomal proteins0.00008366Direct
PYP-like sensor domain (PAS domain)0.00008979Direct
Orange domain-like0.0001288Direct
lambda repressor-like DNA-binding domains0.03069Inherited
gamma-Crystallin-like0.04547Inherited
DNA-binding domain0.1039Inherited
RNA-binding domain, RBD0.1406Inherited
Eukaryotic type KH-domain (KH-domain type I)0.1411Inherited
HLH, helix-loop-helix DNA-binding domain0.2657Inherited
Cupredoxins0.2792Inherited
Galactose-binding domain-like0.4124Inherited
F-box domain0.4124Inherited
Fibronectin type III0.4201Inherited
Cytokine0.443Inherited
"Winged helix" DNA-binding domain0.6192Inherited
Voltage-gated potassium channels0.714Inherited
Frizzled cysteine-rich domain0.798Inherited
Intermediate filament protein, coiled coil region0.8548Inherited
E set domains0.8769Inherited
HMG-box0.8969Inherited
Homeodomain-like1Inherited
POZ domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0001288Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0003318Direct
    55785,55785
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0005052Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.003348Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.02023Inherited
    46689,46689
  • 46689 - Homeodomain-like
  • 46689 - Homeodomain-like
  • 0.3001Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.5734Inherited
    57850,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 0.8867Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00003102Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0001288Direct
    49899,57196,57196
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.007615Inherited
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.01994Inherited
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.02644Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.7374Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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