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Xenopus ANatomical entity (XAN): visual system

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical structure [XAO:0003000] <11>(574|729) (574|397|164)
+ + + + 4:   whole organism [XAO:0003004] <12>(471|606) (473|338|146)
+ + + 3:   anatomical group [XAO:0003001] <2>(425|543) (426|312|134)
+ + 2:   anatomical system [XAO:0003002] <19>(301|396) (304|208|92)
+ + 2:   nervous system [XAO:0000177] <10>(135|201) (138|112|53)
+ 1:   sensory system [XAO:0003194] <5>(40|54) (44|29|13)
0:   visual system [XAO:0003198] <5>(27|34) (29|16|8)
- 1:   eye [XAO:0000179] <15>(24|28) (26|14|7)
- 1:   optic vesicle [XAO:0000228] <2>(4|9) (5|3|1)
- 1:   Stirnorgan [XAO:0001012](0|0) (0|0|0)
- 1:   eye primordium [XAO:0000227](3|2) (3|0|0)
- 1:   pineal gland [XAO:0000160](1|2) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
Hedgehog/DD-peptidase0Direct
PriA/YqbF domain0Direct
14-3-3 protein0Direct
Synuclein0Direct
Zn-binding ribosomal proteins0Direct
Nop domain0Direct
SMAD MH1 domain0.0001086Direct
PYP-like sensor domain (PAS domain)0.0001133Direct
Orange domain-like0.0001656Direct
lambda repressor-like DNA-binding domains0.03661Inherited
gamma-Crystallin-like0.05379Inherited
DNA-binding domain0.1187Inherited
RNA-binding domain, RBD0.1682Inherited
HLH, helix-loop-helix DNA-binding domain0.2814Inherited
Cupredoxins0.3034Inherited
Galactose-binding domain-like0.4378Inherited
F-box domain0.4378Inherited
Cytokine0.4684Inherited
"Winged helix" DNA-binding domain0.6676Inherited
Voltage-gated potassium channels0.7402Inherited
Frizzled cysteine-rich domain0.8488Inherited
Intermediate filament protein, coiled coil region0.8767Inherited
E set domains0.8981Inherited
HMG-box0.9166Inherited
POZ domain1Inherited
Homeodomain-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Arrestin/Vps26-like0Direct
Guanido kinase N-terminal domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Synuclein0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
14-3-3 protein0Direct
Nop domain0Direct
PAS domain of steroid receptor coactivator 1A, NCo-A10Direct
Noggin0Direct
Guanido kinase catalytic domain0Direct
SMAD domain0.00002542Direct
SMAD MH1 domain0.0001118Direct
Hairy Orange domain0.0001768Direct
Extracellular domain of cell surface receptors0.0004857Direct
P4 origin-binding domain-like0.0004857Direct
POU-specific domain0.008788Inherited
Glutathione peroxidase-like0.0226Inherited
Crystallins/Ca-binding development proteins0.0545Inherited
Ephrin ectodomain0.06693Inherited
Canonical RBD0.08513Inherited
I set domains0.2232Inherited
HLH, helix-loop-helix DNA-binding domain0.2353Inherited
F-box domain0.3928Inherited
Fibroblast growth factors (FGF)0.4533Inherited
Forkhead DNA-binding domain0.527Inherited
Voltage-gated potassium channels0.5538Inherited
Higher-molecular-weight phosphotyrosine protein phosphatases0.6335Inherited
Tetramerization domain of potassium channels0.7707Inherited
Frizzled cysteine-rich domain0.8062Inherited
LIM domain0.8345Inherited
Intermediate filament protein, coiled coil region0.8345Inherited
HMG-box0.8757Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Synuclein0Direct
14-3-3 protein0Direct
PriA/YqbF domain0Direct
Nop domain0Direct
Guanido kinase N-terminal domain0Direct
Zn-binding ribosomal proteins0Direct
Hedgehog/DD-peptidase0Direct
SMAD MH1 domain0.00008051Direct
PYP-like sensor domain (PAS domain)0.00008405Direct
Orange domain-like0.0001234Direct
lambda repressor-like DNA-binding domains0.02969Inherited
gamma-Crystallin-like0.04431Inherited
DNA-binding domain0.1019Inherited
Eukaryotic type KH-domain (KH-domain type I)0.1368Inherited
RNA-binding domain, RBD0.1473Inherited
HLH, helix-loop-helix DNA-binding domain0.2543Inherited
Cupredoxins0.2758Inherited
Galactose-binding domain-like0.4051Inherited
F-box domain0.4051Inherited
Fibronectin type III0.4093Inherited
Cytokine0.4355Inherited
"Winged helix" DNA-binding domain0.6337Inherited
Voltage-gated potassium channels0.7061Inherited
Frizzled cysteine-rich domain0.8199Inherited
Intermediate filament protein, coiled coil region0.8481Inherited
E set domains0.8698Inherited
HMG-box0.8893Inherited
POZ domain1Inherited
Homeodomain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0001234Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0003157Direct
    55785,55785
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0004846Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.003222Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.01956Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.1134Inherited
    46689,46689
  • 46689 - Homeodomain-like
  • 46689 - Homeodomain-like
  • 0.296Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.4983Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.5673Inherited
    57850,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 0.8827Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00002955Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0001234Direct
    49899,57196,57196
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.007413Inherited
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.01945Inherited
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.02588Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.7324Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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