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Xenopus ANatomical entity (XAN): pharyngeal region

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(435|562) (438|323|141)
+ + + 3:   anatomical structure [XAO:0003000] <11>(574|728) (574|396|161)
+ + 2:   organism subdivision [XAO:0003013] <11>(375|497) (382|292|125)
+ + 2:   whole organism [XAO:0003004] <12>(448|575) (454|327|143)
+ + 2:   head region [XAO:0000040] <4>(177|248) (182|140|57)
+ + 2:   Xenopus anatomical entity [XAO:0000000] <9>
+ 1:   head [XAO:0003024] <22>(177|247) (182|140|57)
+ 1:   anatomical region [XAO:0003186] <43>(371|485) (375|286|122)
0:   pharyngeal region [XAO:0004261] <7>(21|25) (22|10|6)
- 1:   visceral pouch [XAO:0000282] <6>(3|3) (3|0|0)
- 1:   pharyngeal arch [XAO:0000096] <3>(15|15) (16|3|3)
- 1:   circumpharyngeal ridge [XAO:0004461](0|0) (0|0|0)
- 1:   gill primordium [XAO:0000448](0|0) (0|0|0)
- 1:   pharyngeal endoderm [XAO:0004463](1|0) (1|0|0)
- 1:   pharyngeal mesenchyme [XAO:0004524](0|1) (0|1|1)
- 1:   pharyngeal pouch [XAO:0004260](1|0) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Alanine racemase C-terminal domain-like0Direct
Nop domain0Direct
Homeodomain-like0Direct
PLP-binding barrel0Direct
Hedgehog/DD-peptidase0Direct
14-3-3 protein0Direct
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
"Winged helix" DNA-binding domain0.00000000003992Direct
HLH, helix-loop-helix DNA-binding domain0.00000002349Direct
RNA-binding domain, RBD0.000004648Direct
HMG-box0.000005136Direct
Frizzled cysteine-rich domain0.0000061Direct
p53-like transcription factors0.000006127Direct
Cytokine0.000006987Direct
Orange domain-like0.00001033Direct
Transducin (alpha subunit), insertion domain0.00001084Direct
SMAD MH1 domain0.0005327Direct
Cystine-knot cytokines0.005599Inherited
Sema domain0.08497Inherited
Plexin repeat0.1113Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
14-3-3 protein0Direct
Alanine racemase-like, N-terminal domain0Direct
Eukaryotic ODC-like0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Nop domain0Direct
RUNT domain0Direct
Forkhead DNA-binding domain0.00000000001405Direct
ets domain0.00000000003221Direct
HLH, helix-loop-helix DNA-binding domain0.0000001138Direct
Fibroblast growth factors (FGF)0.000003415Direct
Frizzled cysteine-rich domain0.00001031Direct
HMG-box0.00001188Direct
Hairy Orange domain0.00001324Direct
Canonical RBD0.00001517Direct
Transducin (alpha subunit), insertion domain0.00001558Direct
T-box0.00004532Direct
Extracellular domain of cell surface receptors0.0001057Direct
L domain0.0001057Direct
Pointed domain0.0005971Direct
SMAD MH1 domain0.0006041Direct
Transforming growth factor (TGF)-beta0.001216Inherited
I set domains0.003619Inherited
Sema domain0.05018Inherited
Plexin repeat0.1324Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nop domain0Direct
Homeodomain-like0Direct
GINS helical bundle-like0Direct
PLP-binding barrel0Direct
PriA/YqbF domain0Direct
Hedgehog/DD-peptidase0Direct
Alanine racemase C-terminal domain-like0Direct
14-3-3 protein0Direct
"Winged helix" DNA-binding domain0.00000000002761Direct
HLH, helix-loop-helix DNA-binding domain0.00000001637Direct
RNA-binding domain, RBD0.000003308Direct
HMG-box0.000003658Direct
Frizzled cysteine-rich domain0.000004353Direct
p53-like transcription factors0.000004373Direct
Cytokine0.000004996Direct
Orange domain-like0.000007406Direct
Transducin (alpha subunit), insertion domain0.000007774Direct
SMAD MH1 domain0.000399Direct
P-domain of calnexin/calreticulin0.002454Inherited
Cystine-knot cytokines0.004336Inherited
Sema domain0.07123Inherited
Plexin repeat0.09497Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.000007406Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000007774Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.00006848Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00006848Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.000171Direct
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.0004178Direct
    49899,63887
  • 49899 - Concanavalin A-like lectins/glucanases
  • 63887 - P-domain of calnexin/calreticulin
  • 0.002454Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.07123Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.1319Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00005663Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0004178Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0008678Direct
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.02304Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.2226Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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