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Xenopus ANatomical entity (XAN): pharyngeal region

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|565) (440|325|142)
+ + 2:   whole organism [XAO:0003004] <12>(462|598) (465|335|145)
+ + 2:   organism subdivision [XAO:0003013] <11>(376|498) (381|292|126)
+ + 2:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   head region [XAO:0000040] <4>(178|245) (183|137|58)
+ 1:   anatomical region [XAO:0003186] <51>(371|484) (374|284|123)
+ 1:   head [XAO:0003024] <22>(178|244) (183|137|58)
0:   pharyngeal region [XAO:0004261] <7>(19|25) (21|9|6)
- 1:   visceral pouch [XAO:0000282] <6>(3|3) (3|0|0)
- 1:   pharyngeal arch [XAO:0000096] <3>(13|15) (14|3|3)
- 1:   circumpharyngeal ridge [XAO:0004461](0|0) (0|0|0)
- 1:   gill primordium [XAO:0000448](0|0) (0|0|0)
- 1:   pharyngeal endoderm [XAO:0004463](1|0) (1|0|0)
- 1:   pharyngeal mesenchyme [XAO:0004524](0|1) (0|0|1)
- 1:   pharyngeal pouch [XAO:0004260](1|0) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Alanine racemase C-terminal domain-like0Direct
PLP-binding barrel0Direct
Nop domain0Direct
Homeodomain-like0Direct
14-3-3 protein0Direct
Hedgehog/DD-peptidase0Direct
"Winged helix" DNA-binding domain0.00000000001219Direct
HLH, helix-loop-helix DNA-binding domain0.000000003606Direct
RNA-binding domain, RBD0.0000008106Direct
HMG-box0.000007328Direct
Frizzled cysteine-rich domain0.000007869Direct
p53-like transcription factors0.000008425Direct
Cytokine0.000008729Direct
Orange domain-like0.00001217Direct
Transducin (alpha subunit), insertion domain0.00001329Direct
SMAD MH1 domain0.0005993Direct
Cystine-knot cytokines0.003194Inherited
Sema domain0.09454Inherited
Plexin repeat0.1239Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog (development protein), N-terminal signaling domain0Direct
14-3-3 protein0Direct
Eukaryotic ODC-like0Direct
Nop domain0Direct
Alanine racemase-like, N-terminal domain0Direct
RUNT domain0Direct
Homeodomain0Direct
Forkhead DNA-binding domain0.00000000002284Direct
ets domain0.00000000004472Direct
HLH, helix-loop-helix DNA-binding domain0.00000001912Direct
Fibroblast growth factors (FGF)0.000004221Direct
Canonical RBD0.000005612Direct
Frizzled cysteine-rich domain0.00001309Direct
Hairy Orange domain0.00001543Direct
HMG-box0.0000165Direct
Transducin (alpha subunit), insertion domain0.0000189Direct
T-box0.00005469Direct
Extracellular domain of cell surface receptors0.0001191Direct
L domain0.0001191Direct
Pointed domain0.0006583Direct
SMAD MH1 domain0.0006773Direct
Transforming growth factor (TGF)-beta0.002148Inherited
I set domains0.00466Inherited
Sema domain0.05601Inherited
Plexin repeat0.1469Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
Hedgehog/DD-peptidase0Direct
14-3-3 protein0Direct
Nop domain0Direct
Alanine racemase C-terminal domain-like0Direct
PLP-binding barrel0Direct
"Winged helix" DNA-binding domain0.000000000008483Direct
HLH, helix-loop-helix DNA-binding domain0.000000002523Direct
RNA-binding domain, RBD0.0000005745Direct
HMG-box0.000005267Direct
Frizzled cysteine-rich domain0.000005659Direct
p53-like transcription factors0.000006065Direct
Cytokine0.000006286Direct
Orange domain-like0.000008776Direct
Transducin (alpha subunit), insertion domain0.000009598Direct
SMAD MH1 domain0.0004518Direct
Protein kinase-like (PK-like)0.000786Direct
Cystine-knot cytokines0.002456Inherited
P-domain of calnexin/calreticulin0.002664Inherited
Sema domain0.07979Inherited
Plexin repeat0.1065Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.000008776Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000009598Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00007797Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.00007797Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.0002316Direct
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.0004647Direct
    49899,63887
  • 49899 - Concanavalin A-like lectins/glucanases
  • 63887 - P-domain of calnexin/calreticulin
  • 0.002664Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.07979Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00006701Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0004647Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0009787Direct
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.02496Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.1098Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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