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Xenopus ANatomical entity (XAN): neurogenic placode

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   multicellular anatomical structure [XAO:0005002] <4>(437|565) (440|325|142)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(462|598) (465|335|145)
+ + + 3:   primary germ layer [XAO:0003011] <4>(109|155) (109|73|30)
+ + + 3:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ + + 3:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + 2:   ectoderm [XAO:0000001] <15>(62|85) (62|43|11)
+ + 2:   embryonic structure [XAO:0003042] <58>(42|52) (43|27|13)
+ + 2:   neuroectoderm [XAO:0000042] <9>(27|31) (27|15|5)
+ 1:   cranial placode [XAO:0000305] <2>(12|14) (12|6|2)
0:   neurogenic placode [XAO:0004620] <6>(9|11) (9|3|0)
- 1:   lateral line placode [XAO:0000440] <5>(0|0) (0|0|0)
- 1:   epibranchial placode [XAO:0000284] <3>(0|0) (0|0|0)
- 1:   olfactory placode [XAO:0000005](0|0) (0|0|0)
- 1:   otic placode [XAO:0000223](3|4) (3|1|0)
- 1:   profundal placode [XAO:0004093](1|1) (1|0|0)
- 1:   trigeminal placode [XAO:0000225](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Cytokine0.000001571Direct
p53-like transcription factors0.00001116Direct
Cystine-knot cytokines0.00004408Direct
lambda repressor-like DNA-binding domains0.0001729Direct
HMG-box0.0002595Direct
Homeodomain-like0.5338Inherited
Plexin repeat1Inherited
Sema domain1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Fibroblast growth factors (FGF)0.0000009973Direct
P4 origin-binding domain-like0.00001442Direct
Transforming growth factor (TGF)-beta0.00002023Direct
Paired domain0.0001174Direct
POU-specific domain0.0001631Direct
T-box0.000269Direct
HMG-box0.0003584Direct
Homeodomain0.6962Inherited
Sema domain1Inherited
Plexin repeat1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Synuclein0Direct
Cytokine0.00000112Direct
p53-like transcription factors0.000008045Direct
Cystine-knot cytokines0.00003222Direct
lambda repressor-like DNA-binding domains0.0001282Direct
HMG-box0.0001936Direct
Homeodomain-like0.4986Inherited
Plexin repeat1Inherited
Sema domain1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0002801Direct
    57440,57440
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 0.0009297Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 1Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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