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Xenopus DEvelopment stage (XDE): tailbud stage

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ 1:   embryonic stage [XAO:1000012] <6>(41|57) (42|42|17)
0:   tailbud stage [XAO:1000007] <2>(18|16) (18|14|5)
- 1:   late tailbud stage [XAO:1000080] <12>(14|14) (14|10|3)
- 1:   early tailbud stage [XAO:1000002] <7>(4|2) (4|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
MAST3 pre-PK domain-like0Direct
Cation efflux protein cytoplasmic domain-like0Direct
SpoIIaa-like0.0005181Direct
Periplasmic binding protein-like II0.04389Inherited
gamma-Crystallin-like0.06702Inherited
cAMP-binding domain-like0.1056Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.1836Inherited
Nicotinic receptor ligand binding domain-like0.1836Inherited
Periplasmic binding protein-like I0.3461Inherited
L domain-like0.3777Inherited
SRCR-like0.548Inherited
PLC-like phosphodiesterases0.5634Inherited
Cytokine0.6439Inherited
beta-beta-alpha zinc fingers0.8791Inherited
Nuclear receptor ligand-binding domain0.9324Inherited
E set domains0.9781Inherited
EGF/Laminin1Inherited
Homeodomain-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
MAST3 pre-PK domain-like0Direct
THAP domain0.01045Inherited
Crystallins/Ca-binding development proteins0.05132Inherited
Phosphate binding protein-like0.07858Inherited
Nicotinic receptor ligand binding domain-like0.1496Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.1496Inherited
Ngr ectodomain-like0.2838Inherited
Pleckstrin-homology domain (PH domain)0.2942Inherited
Cadherin0.3021Inherited
Forkhead DNA-binding domain0.3372Inherited
L-arabinose binding protein-like0.3712Inherited
Fibroblast growth factors (FGF)0.5928Inherited
PLC-like (P variant)0.5988Inherited
Mammalian PLC0.6411Inherited
Nuclear receptor ligand-binding domain0.8978Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cation efflux protein cytoplasmic domain-like0Direct
MAST3 pre-PK domain-like0Direct
SpoIIaa-like0.0003509Direct
Periplasmic binding protein-like II0.03343Inherited
gamma-Crystallin-like0.05239Inherited
cAMP-binding domain-like0.08595Inherited
Nicotinic receptor ligand binding domain-like0.1566Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.1566Inherited
Periplasmic binding protein-like I0.3052Inherited
L domain-like0.3342Inherited
SRCR-like0.4999Inherited
PLC-like phosphodiesterases0.5153Inherited
Cytokine0.5986Inherited
beta-beta-alpha zinc fingers0.8468Inherited
Nuclear receptor ligand-binding domain0.9082Inherited
E set domains0.9631Inherited
EGF/Laminin1Inherited
Homeodomain-like1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46689,57667
  • 46689 - Homeodomain-like
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    50044,47769
  • 50044 - SH3-domain
  • 47769 - SAM/Pointed domain
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    117839,117839
  • 117839 - WWE domain
  • 117839 - WWE domain
  • 0Direct
    48371,101447
  • 48371 - ARM repeat
  • 101447 - Formin homology 2 domain (FH2 domain)
  • 0Direct
    48350,50729
  • 48350 - GTPase activation domain, GAP
  • 50729 - PH domain-like
  • 0Direct
    161111,160240
  • 161111 - Cation efflux protein transmembrane domain-like
  • 160240 - Cation efflux protein cytoplasmic domain-like
  • 0Direct
    48726,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.1566Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.2418Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.3632Inherited
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.646Inherited
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0.646Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    48726,48726,82895
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    48726,82895,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.4101Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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