SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus DEvelopment stage (XDE): embryonic stage

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Xenopus developmental stage [XAO:1000000] <6>
0:   embryonic stage [XAO:1000012] <6>(41|57) (42|42|17)
- 1:   neurula stage [XAO:1000006] <9>(2|3) (3|1|0)
- 1:   cleavage stage [XAO:1000004] <7>(1|1) (1|0|0)
- 1:   gastrula stage [XAO:1000005] <7>(6|9) (6|8|2)
- 1:   blastula stage [XAO:1000003] <3>(0|0) (0|0|0)
- 1:   tailbud stage [XAO:1000007] <2>(18|16) (18|14|5)
- 1:   NF stage 1 [XAO:1000001](2|1) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
MAST3 pre-PK domain-like0Direct
Cation efflux protein cytoplasmic domain-like0Direct
FtsH protease domain-like0Direct
Insulin-like0Direct
Fibrinogen coiled-coil and central regions0Direct
FMT C-terminal domain-like0Direct
Cu,Zn superoxide dismutase-like0Direct
SRF-like0Direct
Doublecortin (DC)0Direct
TAFH domain-like0Direct
Hedgehog/DD-peptidase0Direct
Oligoxyloglucan reducing end-specific cellobiohydrolase0Direct
GDNF receptor-like0Direct
Homeodomain-like0.0000000000236Direct
Voltage-gated potassium channels0.0000002874Direct
Family A G protein-coupled receptor-like0.0000007909Direct
Immunoglobulin0.000001093Direct
Fibronectin type III0.000002333Direct
EGF/Laminin0.00005452Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00008158Direct
Nicotinic receptor ligand binding domain-like0.00008158Direct
beta-beta-alpha zinc fingers0.0001881Direct
POZ domain0.000277Direct
lambda repressor-like DNA-binding domains0.000397Direct
Growth factor receptor domain0.000487Direct
L domain-like0.0006646Direct
SAM/Pointed domain0.0009998Direct
E set domains0.00111Inherited
SpoIIaa-like0.02406Inherited
Cytokine0.02464Inherited
cAMP-binding domain-like0.03892Inherited
Periplasmic binding protein-like I0.03936Inherited
Hormone receptor domain0.0566Inherited
PLC-like phosphodiesterases0.07823Inherited
Nuclear receptor ligand-binding domain0.1228Inherited
gamma-Crystallin-like0.1302Inherited
Periplasmic binding protein-like II0.1671Inherited
SRCR-like0.1961Inherited
"Winged helix" DNA-binding domain0.4142Inherited
Acid phosphatase/Vanadium-dependent haloperoxidase0.4205Inherited
Alkaline phosphatase-like0.6769Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
TAFH domain-like0Direct
SRF-like0Direct
Paired domain0Direct
GDNF receptor-like0Direct
Pseudouridine synthase I TruA0Direct
Family 1 of glycosyl hydrolase0Direct
SMAD4-binding domain of oncoprotein Ski0Direct
Insulin-like0Direct
L domain0Direct
Heat-shock transcription factor0Direct
Arrestin/Vps26-like0Direct
FtsH protease domain-like0Direct
Cu,Zn superoxide dismutase-like0Direct
NHL repeat0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Dachshund-homology domain0Direct
COMT-like0Direct
CUT domain0Direct
Pseudouridine synthase II TruB0Direct
Transcriptional factor tubby, C-terminal domain0Direct
Noggin0Direct
Gamma-glutamyltranspeptidase-like0Direct
Fibrinogen coiled-coil and central regions0Direct
Polo-box duplicated region0Direct
MAST3 pre-PK domain-like0Direct
1,3-glucuronyltransferase0Direct
PreBEACH PH-like domain0Direct
Other IPT/TIG domains0Direct
Doublecortin (DC)0Direct
RUNT domain0Direct
Homeodomain0.000000000000001109Direct
Fibronectin type III0.000000509Direct
Rhodopsin-like0.00001411Direct
Nicotinic receptor ligand binding domain-like0.0000505Direct
Neurotransmitter-gated ion-channel transmembrane pore0.0000505Direct
EGF-type module0.00008456Direct
Forkhead DNA-binding domain0.0001628Direct
Voltage-gated potassium channels0.0002578Direct
Classic zinc finger, C2H20.0003896Direct
SAM (sterile alpha motif) domain0.0006643Direct
Ankyrin repeat0.0008176Direct
Tetramerization domain of potassium channels0.004382Inherited
Fibroblast growth factors (FGF)0.005046Inherited
Pleckstrin-homology domain (PH domain)0.007135Inherited
28-residue LRR0.008859Inherited
Hormone receptor domain0.009702Inherited
Ngr ectodomain-like0.01013Inherited
Cadherin0.01554Inherited
L-arabinose binding protein-like0.01786Inherited
Mammalian PLC0.02612Inherited
Nuclear receptor ligand-binding domain0.0958Inherited
THAP domain0.1004Inherited
Crystallins/Ca-binding development proteins0.1073Inherited
Phosphate binding protein-like0.1573Inherited
PLC-like (P variant)0.1778Inherited
VWC domain0.3419Inherited
Arylsulfatase0.6982Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
FtsH protease domain-like0Direct
SRF-like0Direct
Hedgehog/DD-peptidase0Direct
TAFH domain-like0Direct
Fibrinogen coiled-coil and central regions0Direct
Insulin-like0Direct
Oligoxyloglucan reducing end-specific cellobiohydrolase0Direct
GDNF receptor-like0Direct
FMT C-terminal domain-like0Direct
Doublecortin (DC)0Direct
Cation efflux protein cytoplasmic domain-like0Direct
Cu,Zn superoxide dismutase-like0Direct
MAST3 pre-PK domain-like0Direct
Homeodomain-like0.00000000001553Direct
Voltage-gated potassium channels0.0000001893Direct
Family A G protein-coupled receptor-like0.0000005216Direct
Immunoglobulin0.0000007217Direct
Fibronectin type III0.000001547Direct
EGF/Laminin0.00003622Direct
Nicotinic receptor ligand binding domain-like0.00005429Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00005429Direct
beta-beta-alpha zinc fingers0.000126Direct
POZ domain0.0001861Direct
lambda repressor-like DNA-binding domains0.0002676Direct
Growth factor receptor domain0.0003294Direct
L domain-like0.0004527Direct
SAM/Pointed domain0.0006831Direct
E set domains0.0007588Direct
SpoIIaa-like0.01781Inherited
Cytokine0.01828Inherited
cAMP-binding domain-like0.02954Inherited
Periplasmic binding protein-like I0.02986Inherited
Hormone receptor domain0.04365Inherited
PLC-like phosphodiesterases0.06238Inherited
Nuclear receptor ligand-binding domain0.1019Inherited
gamma-Crystallin-like0.109Inherited
Periplasmic binding protein-like II0.1418Inherited
SRCR-like0.1679Inherited
"Winged helix" DNA-binding domain0.3687Inherited
Acid phosphatase/Vanadium-dependent haloperoxidase0.3746Inherited
UDP-Glycosyltransferase/glycogen phosphorylase0.6263Inherited
Alkaline phosphatase-like0.6332Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
117281,117281
  • 117281 - Kelch motif
  • 117281 - Kelch motif
  • 0Direct
    52540,140990
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 140990 - FtsH protease domain-like
  • 0Direct
    82895,57424
  • 82895 - TSP-1 type 1 repeat
  • 57424 - LDL receptor-like module
  • 0Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    54236,50729
  • 54236 - Ubiquitin-like
  • 50729 - PH domain-like
  • 0Direct
    46689,57667
  • 46689 - Homeodomain-like
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    57196,50494
  • 57196 - EGF/Laminin
  • 50494 - Trypsin-like serine proteases
  • 0Direct
    50044,47769
  • 50044 - SH3-domain
  • 47769 - SAM/Pointed domain
  • 0Direct
    100895,48726
  • 100895 - Kazal-type serine protease inhibitors
  • 48726 - Immunoglobulin
  • 0Direct
    57535,57196
  • 57535 - Complement control module/SCR domain
  • 57196 - EGF/Laminin
  • 0Direct
    82185,82185
  • 82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
  • 82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
  • 0Direct
    56436,57535
  • 56436 - C-type lectin-like
  • 57535 - Complement control module/SCR domain
  • 0Direct
    46955,63763
  • 46955 - Putative DNA-binding domain
  • 63763 - SAND domain-like
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    101690,53098
  • 101690 - PAZ domain
  • 53098 - Ribonuclease H-like
  • 0Direct
    57196,56436
  • 57196 - EGF/Laminin
  • 56436 - C-type lectin-like
  • 0Direct
    57424,50494
  • 57424 - LDL receptor-like module
  • 50494 - Trypsin-like serine proteases
  • 0Direct
    57535,49854
  • 57535 - Complement control module/SCR domain
  • 49854 - Spermadhesin, CUB domain
  • 0Direct
    82615,82615
  • 82615 - Polo-box domain
  • 82615 - Polo-box domain
  • 0Direct
    47986,52129
  • 47986 - DEATH domain
  • 52129 - Caspase-like
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    117839,117839
  • 117839 - WWE domain
  • 117839 - WWE domain
  • 0Direct
    48371,101447
  • 48371 - ARM repeat
  • 101447 - Formin homology 2 domain (FH2 domain)
  • 0Direct
    48350,50729
  • 48350 - GTPase activation domain, GAP
  • 50729 - PH domain-like
  • 0Direct
    54236,48366
  • 54236 - Ubiquitin-like
  • 48366 - Ras GEF
  • 0Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0Direct
    161111,160240
  • 161111 - Cation efflux protein transmembrane domain-like
  • 160240 - Cation efflux protein cytoplasmic domain-like
  • 0Direct
    48726,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    103473,100895
  • 103473 - MFS general substrate transporter
  • 100895 - Kazal-type serine protease inhibitors
  • 0Direct
    89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    49854,57424
  • 49854 - Spermadhesin, CUB domain
  • 57424 - LDL receptor-like module
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00003895Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.00005429Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.00009517Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.000203Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.01781Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.02359Inherited
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.02638Inherited
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0.02638Inherited
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.07072Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.523Inherited
    55486,82895
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 82895 - TSP-1 type 1 repeat
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,57196,57184
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    57196,57535,57535
  • 57196 - EGF/Laminin
  • 57535 - Complement control module/SCR domain
  • 57535 - Complement control module/SCR domain
  • 0Direct
    54511,57184,57184
  • 54511 - GFP-like
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    52058,48726,49265
  • 52058 - L domain-like
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0Direct
    57630,57196,57196
  • 57630 - GLA-domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0Direct
    48726,48726,82895
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    48726,82895,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    141072,141072,141072
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 0Direct
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    57535,49854,57535
  • 57535 - Complement control module/SCR domain
  • 49854 - Spermadhesin, CUB domain
  • 57535 - Complement control module/SCR domain
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0001099Direct
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.0008114Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.03181Inherited
    48065,50729,50044
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 50044 - SH3-domain
  • 0.09972Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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