SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus DEvelopment stage (XDE): embryonic stage

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Xenopus developmental stage [XAO:1000000] <6>
0:   embryonic stage [XAO:1000012] <6>(41|58) (42|42|16)
- 1:   neurula stage [XAO:1000006] <9>(2|3) (3|1|0)
- 1:   cleavage stage [XAO:1000004] <7>(1|1) (1|0|0)
- 1:   gastrula stage [XAO:1000005] <7>(6|9) (6|8|1)
- 1:   blastula stage [XAO:1000003] <3>(0|1) (0|0|0)
- 1:   tailbud stage [XAO:1000007] <2>(19|16) (19|14|5)
- 1:   NF stage 1 [XAO:1000001](2|1) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
MAST3 pre-PK domain-like0Direct
Fibrinogen coiled-coil and central regions0Direct
TAFH domain-like0Direct
Cu,Zn superoxide dismutase-like0Direct
GDNF receptor-like0Direct
FtsH protease domain-like0Direct
FMT C-terminal domain-like0Direct
Cation efflux protein cytoplasmic domain-like0Direct
SRF-like0Direct
Doublecortin (DC)0Direct
Oligoxyloglucan reducing end-specific cellobiohydrolase0Direct
Insulin-like0Direct
Hedgehog/DD-peptidase0Direct
Homeodomain-like0.00000000001899Direct
Voltage-gated potassium channels0.0000001819Direct
Family A G protein-coupled receptor-like0.0000008659Direct
Immunoglobulin0.0000008893Direct
Fibronectin type III0.000002529Direct
EGF/Laminin0.00005857Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00008367Direct
Nicotinic receptor ligand binding domain-like0.00008367Direct
beta-beta-alpha zinc fingers0.0001638Direct
POZ domain0.000218Direct
lambda repressor-like DNA-binding domains0.0004067Direct
Growth factor receptor domain0.0005118Direct
L domain-like0.0007097Direct
E set domains0.001165Inherited
Periplasmic binding protein-like I0.009684Inherited
Cadherin-like0.02092Inherited
SpoIIaa-like0.0243Inherited
Cytokine0.02509Inherited
cAMP-binding domain-like0.03955Inherited
Hormone receptor domain0.05743Inherited
PLC-like phosphodiesterases0.07928Inherited
Nuclear receptor ligand-binding domain0.1256Inherited
Periplasmic binding protein-like II0.168Inherited
gamma-Crystallin-like0.188Inherited
SRCR-like0.1957Inherited
"Winged helix" DNA-binding domain0.3671Inherited
Acid phosphatase/Vanadium-dependent haloperoxidase0.421Inherited
Alkaline phosphatase-like0.6799Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Family 1 of glycosyl hydrolase0Direct
Pseudouridine synthase II TruB0Direct
Transcriptional factor tubby, C-terminal domain0Direct
Dachshund-homology domain0Direct
MAST3 pre-PK domain-like0Direct
NHL repeat0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Pseudouridine synthase I TruA0Direct
Doublecortin (DC)0Direct
TAFH domain-like0Direct
SRF-like0Direct
Other IPT/TIG domains0Direct
1,3-glucuronyltransferase0Direct
GDNF receptor-like0Direct
Insulin-like0Direct
CUT domain0Direct
SMAD4-binding domain of oncoprotein Ski0Direct
Cu,Zn superoxide dismutase-like0Direct
Paired domain0Direct
L domain0Direct
RUNT domain0Direct
PreBEACH PH-like domain0Direct
COMT-like0Direct
Fibrinogen coiled-coil and central regions0Direct
Noggin0Direct
FtsH protease domain-like0Direct
Gamma-glutamyltranspeptidase-like0Direct
Arrestin/Vps26-like0Direct
Polo-box duplicated region0Direct
Heat-shock transcription factor0Direct
Homeodomain5.565e-16Direct
Fibronectin type III0.0000005633Direct
Rhodopsin-like0.00001546Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00005203Direct
Nicotinic receptor ligand binding domain-like0.00005203Direct
EGF-type module0.00008993Direct
Voltage-gated potassium channels0.0001637Direct
Forkhead DNA-binding domain0.0001711Direct
Classic zinc finger, C2H20.0004269Direct
SAM (sterile alpha motif) domain0.0006909Direct
Ankyrin repeat0.0008895Direct
Tetramerization domain of potassium channels0.002687Inherited
L-arabinose binding protein-like0.002875Inherited
Fibroblast growth factors (FGF)0.005166Inherited
Transforming growth factor (TGF)-beta0.007117Inherited
Pleckstrin-homology domain (PH domain)0.007554Inherited
28-residue LRR0.00904Inherited
Hormone receptor domain0.009863Inherited
Ngr ectodomain-like0.01054Inherited
Cadherin0.01929Inherited
Mammalian PLC0.02651Inherited
Nuclear receptor ligand-binding domain0.09815Inherited
THAP domain0.1014Inherited
Crystallins/Ca-binding development proteins0.1586Inherited
Phosphate binding protein-like0.1586Inherited
PLC-like (P variant)0.1778Inherited
VWC domain0.3449Inherited
Arylsulfatase0.6999Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Oligoxyloglucan reducing end-specific cellobiohydrolase0Direct
MAST3 pre-PK domain-like0Direct
Doublecortin (DC)0Direct
Cu,Zn superoxide dismutase-like0Direct
Insulin-like0Direct
Hedgehog/DD-peptidase0Direct
FtsH protease domain-like0Direct
GDNF receptor-like0Direct
TAFH domain-like0Direct
Cation efflux protein cytoplasmic domain-like0Direct
FMT C-terminal domain-like0Direct
Fibrinogen coiled-coil and central regions0Direct
SRF-like0Direct
Homeodomain-like0.00000000001249Direct
Voltage-gated potassium channels0.0000001199Direct
Family A G protein-coupled receptor-like0.0000005714Direct
Immunoglobulin0.0000005873Direct
Fibronectin type III0.000001677Direct
EGF/Laminin0.00003904Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00005582Direct
Nicotinic receptor ligand binding domain-like0.00005582Direct
beta-beta-alpha zinc fingers0.0001099Direct
POZ domain0.0001465Direct
lambda repressor-like DNA-binding domains0.0002748Direct
Growth factor receptor domain0.0003475Direct
L domain-like0.0004848Direct
SAM/Pointed domain0.0007184Direct
E set domains0.0007984Direct
Periplasmic binding protein-like I0.006857Inherited
Cadherin-like0.0154Inherited
SpoIIaa-like0.01804Inherited
Cytokine0.01865Inherited
cAMP-binding domain-like0.03004Inherited
Hormone receptor domain0.04435Inherited
PLC-like phosphodiesterases0.06324Inherited
Nuclear receptor ligand-binding domain0.1043Inherited
Periplasmic binding protein-like II0.1429Inherited
gamma-Crystallin-like0.1608Inherited
SRCR-like0.1677Inherited
"Winged helix" DNA-binding domain0.3235Inherited
Acid phosphatase/Vanadium-dependent haloperoxidase0.3744Inherited
Alkaline phosphatase-like0.6364Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48350,50729
  • 48350 - GTPase activation domain, GAP
  • 50729 - PH domain-like
  • 0Direct
    101690,53098
  • 101690 - PAZ domain
  • 53098 - Ribonuclease H-like
  • 0Direct
    57196,50494
  • 57196 - EGF/Laminin
  • 50494 - Trypsin-like serine proteases
  • 0Direct
    46955,63763
  • 46955 - Putative DNA-binding domain
  • 63763 - SAND domain-like
  • 0Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    100895,48726
  • 100895 - Kazal-type serine protease inhibitors
  • 48726 - Immunoglobulin
  • 0Direct
    82895,57424
  • 82895 - TSP-1 type 1 repeat
  • 57424 - LDL receptor-like module
  • 0Direct
    48726,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    48371,101447
  • 48371 - ARM repeat
  • 101447 - Formin homology 2 domain (FH2 domain)
  • 0Direct
    52540,140990
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 140990 - FtsH protease domain-like
  • 0Direct
    46689,57667
  • 46689 - Homeodomain-like
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    57196,56436
  • 57196 - EGF/Laminin
  • 56436 - C-type lectin-like
  • 0Direct
    54236,50729
  • 54236 - Ubiquitin-like
  • 50729 - PH domain-like
  • 0Direct
    117839,117839
  • 117839 - WWE domain
  • 117839 - WWE domain
  • 0Direct
    57535,57196
  • 57535 - Complement control module/SCR domain
  • 57196 - EGF/Laminin
  • 0Direct
    103473,100895
  • 103473 - MFS general substrate transporter
  • 100895 - Kazal-type serine protease inhibitors
  • 0Direct
    56436,57535
  • 56436 - C-type lectin-like
  • 57535 - Complement control module/SCR domain
  • 0Direct
    57535,49854
  • 57535 - Complement control module/SCR domain
  • 49854 - Spermadhesin, CUB domain
  • 0Direct
    117281,117281
  • 117281 - Kelch motif
  • 117281 - Kelch motif
  • 0Direct
    82615,82615
  • 82615 - Polo-box domain
  • 82615 - Polo-box domain
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    82185,82185
  • 82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
  • 82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
  • 0Direct
    49854,57424
  • 49854 - Spermadhesin, CUB domain
  • 57424 - LDL receptor-like module
  • 0Direct
    47986,52129
  • 47986 - DEATH domain
  • 52129 - Caspase-like
  • 0Direct
    54236,48366
  • 54236 - Ubiquitin-like
  • 48366 - Ras GEF
  • 0Direct
    161111,160240
  • 161111 - Cation efflux protein transmembrane domain-like
  • 160240 - Cation efflux protein cytoplasmic domain-like
  • 0Direct
    50044,47769
  • 50044 - SH3-domain
  • 47769 - SAM/Pointed domain
  • 0Direct
    57424,50494
  • 57424 - LDL receptor-like module
  • 50494 - Trypsin-like serine proteases
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00002979Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.00005582Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.00007893Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0002081Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.01804Inherited
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0.02681Inherited
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.02681Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0285Inherited
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.07148Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.5265Inherited
    55486,82895
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 82895 - TSP-1 type 1 repeat
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57630,57196,57196
  • 57630 - GLA-domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0Direct
    48726,82895,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    57196,57535,57535
  • 57196 - EGF/Laminin
  • 57535 - Complement control module/SCR domain
  • 57535 - Complement control module/SCR domain
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0Direct
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    57184,57196,57184
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0Direct
    48726,48726,82895
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    54511,57184,57184
  • 54511 - GFP-like
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    57535,49854,57535
  • 57535 - Complement control module/SCR domain
  • 49854 - Spermadhesin, CUB domain
  • 57535 - Complement control module/SCR domain
  • 0Direct
    141072,141072,141072
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 0Direct
    52058,48726,49265
  • 52058 - L domain-like
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0001166Direct
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.0006283Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.05072Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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