SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus DEvelopment stage (XDE): NF stage 29 and 30

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   embryonic stage [XAO:1000012] <6>(41|60) (43|44|18)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ + 2:   tailbud stage [XAO:1000007] <2>(19|17) (19|16|6)
+ 1:   late tailbud stage [XAO:1000080] <12>(15|14) (15|11|4)
+ 1:   NF stage [XAO:1000094] <68>(437|583) (437|330|141)
0:   NF stage 29 and 30 [XAO:1000045](2|3) (2|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PLC-like phosphodiesterases0.000006119Direct
beta-beta-alpha zinc fingers0.0006046Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Mammalian PLC0.000005424Direct
ABC transporter transmembrane region0.000674Direct
PLC-like (P variant)0.0006972Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PLC-like phosphodiesterases0.000004055Direct
beta-beta-alpha zinc fingers0.0004112Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0.000005675Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.000005675Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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