SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Yeast Phenotype (YP): nutrient utilization

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: YP Hierarchy (yeast phenotype from Ascomycete phenotype ontology)

Shortest distance to current term (+ for parents, - for children) YP term [YP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   observable [APO:0000017] <7>
+ 1:   metabolism and growth [APO:0000094] <13>(76|72) (77|35|7)
0:   nutrient utilization [APO:0000096] <9>(21|18) (21|8|1)
- 1:   utilization of carbon source [APO:0000098] <2>(13|13) (13|6|1)
- 1:   auxotrophy [APO:0000097](0|0) (0|0|0)
- 1:   nutrient uptake [APO:0000100](1|0) (1|0|0)
- 1:   utilization of iron source [APO:0000157](1|1) (1|1|0)
- 1:   utilization of magnesium source [APO:0000294](0|0) (0|0|0)
- 1:   utilization of nitrogen source [APO:0000099](7|5) (7|2|0)
- 1:   utilization of phosphorus source [APO:0000125](0|0) (0|0|0)
- 1:   utilization of sulfur source [APO:0000219](0|0) (0|0|0)
- 1:   utilization of zinc source [APO:0000293](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L130Direct
F1F0 ATP synthase subunit C0Direct
Ribosomal protein L140Direct
Ribosomal L11/L12e N-terminal domain0Direct
Ribosomal protein L11, C-terminal domain0Direct
Endosomal sorting complex assembly domain0Direct
S13-like H2TH domain0Direct
Ribosomal protein L60Direct
TK C-terminal domain-like0.002472Inherited
Class II aaRS and biotin synthetases0.01628Inherited
SAICAR synthase-like0.01639Inherited
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.02746Inherited
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.06467Inherited
Nucleotidylyl transferase0.197Inherited
PreATP-grasp domain0.2031Inherited
EF-G C-terminal domain-like0.2225Inherited
Glutathione synthetase ATP-binding domain-like0.2944Inherited
NAD(P)-binding Rossmann-fold domains0.3952Inherited
MFS general substrate transporter1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Ribosomal L11/L12e N-terminal domain0Direct
Ribosomal protein L11, C-terminal domain0Direct
Ribosomal protein L140Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein S130Direct
Ribosomal protein L60Direct
Ribosomal protein L130Direct
Vacuolar sorting protein domain0Direct
F1F0 ATP synthase subunit C0Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.02568Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0481Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0498Inherited
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain0.06027Inherited
BC ATP-binding domain-like0.1135Inherited
BC N-terminal domain-like0.1135Inherited
EF-G/eEF-2 domains III and V0.2056Inherited
Class I glutamine amidotransferases (GAT)0.3761Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
S13-like H2TH domain0Direct
Ribosomal protein L130Direct
Ribosomal protein L140Direct
Ribosomal L11/L12e N-terminal domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Endosomal sorting complex assembly domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0Direct
Ribosomal protein L11, C-terminal domain0Direct
Ribosomal protein L60Direct
TK C-terminal domain-like0.002067Inherited
Class II aaRS and biotin synthetases0.014Inherited
SAICAR synthase-like0.0141Inherited
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.02388Inherited
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.05775Inherited
Nucleotidylyl transferase0.1832Inherited
PreATP-grasp domain0.1893Inherited
EF-G C-terminal domain-like0.2079Inherited
Glutathione synthetase ATP-binding domain-like0.2787Inherited
NAD(P)-binding Rossmann-fold domains0.3777Inherited
MFS general substrate transporter1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56053,56053
  • 56053 - Ribosomal protein L6
  • 56053 - Ribosomal protein L6
  • 0Direct
    54747,46906
  • 54747 - Ribosomal L11/L12e N-terminal domain
  • 46906 - Ribosomal protein L11, C-terminal domain
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    50615,52540
  • 50615 - N-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.009206Inherited
    51735,55347
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
  • 0.05775Inherited
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 0.1119Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50615,52540,47917
  • 50615 - N-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)