SUPERFAMILY 1.75 HMM library and genome assignments server

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Yeast Phenotype (YP): mitochondrial genome maintenance

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Root: YP Hierarchy (yeast phenotype from Ascomycete phenotype ontology)

Shortest distance to current term (+ for parents, - for children) YP term [YP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   observable [APO:0000017] <7>
+ + + + 4:   metabolism and growth [APO:0000094] <13>(76|72) (77|35|7)
+ + + 3:   nutrient utilization [APO:0000096] <9>(21|18) (21|8|1)
+ + 2:   utilization of carbon source [APO:0000098] <2>(13|13) (13|6|1)
+ 1:   respiratory metabolism [APO:0000102] <5>(7|7) (7|4|1)
0:   mitochondrial genome maintenance [APO:0000105] <1>(3|3) (3|0|0)
- 1:   mitochondrial rho- mutation frequency [APO:0000104](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Class II aaRS and biotin synthetases0.000276Direct
EF-G C-terminal domain-like0.0004118Direct
Nucleotidylyl transferase0.000483Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0001023Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0003635Direct
EF-G/eEF-2 domains III and V0.0003847Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Class II aaRS and biotin synthetases0.0002272Direct
EF-G C-terminal domain-like0.0003403Direct
Nucleotidylyl transferase0.0003993Direct


Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)