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Zebrafish Anatomy (ZA): central nervous system

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + + 4:   anatomical structure [ZFA:0000037] <16>(265|282) (265|152|72)
+ + + 3:   anatomical group [ZFA:0001512] <5>(168|199) (171|124|60)
+ + + 3:   whole organism [ZFA:0001094] <8>(262|281) (262|150|70)
+ + 2:   anatomical system [ZFA:0001439] <18>(155|187) (159|118|58)
+ 1:   nervous system [ZFA:0000396] <9>(50|53) (55|31|16)
0:   central nervous system [ZFA:0000012] <10>(23|24) (25|15|9)
- 1:   white matter [ZFA:0001682] <23>(4|3) (4|3|3)
- 1:   brain [ZFA:0000008] <12>(14|15) (15|12|7)
- 1:   spinal cord [ZFA:0000075] <12>(4|3) (4|1|0)
- 1:   floor plate [ZFA:0000022] <9>(2|3) (3|0|0)
- 1:   brainstem [ZFA:0001707] <5>(2|2) (2|2|2)
- 1:   roof plate [ZFA:0007058] <5>(0|0) (0|0|0)
- 1:   ventricular system [ZFA:0001261] <5>(1|2) (2|0|0)
- 1:   neuromere [ZFA:0001328] <2>(0|0) (0|0|0)
- 1:   neuraxis flexure [ZFA:0005593] <1>(0|0) (0|0|0)
- 1:   grey matter [ZFA:0001681](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
HIT-like0Direct
Doublecortin (DC)0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
PP2C-like0Direct
Composite domain of metallo-dependent hydrolases0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
BRK domain-like0Direct
Cyclin-like0.01882Inherited
SMAD/FHA domain0.05522Inherited
SMAD MH1 domain0.1019Inherited
lambda repressor-like DNA-binding domains0.1865Inherited
Homeodomain-like0.2092Inherited
Subtilisin-like0.25Inherited
Protease propeptides/inhibitors0.25Inherited
Cadherin-like0.2971Inherited
Fibronectin type III0.3019Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.3194Inherited
Class II aaRS and biotin synthetases0.3321Inherited
beta-beta-alpha zinc fingers0.3888Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.4871Inherited
HLH, helix-loop-helix DNA-binding domain0.6035Inherited
Immunoglobulin0.7488Inherited
PDZ domain-like0.787Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
Doublecortin (DC)0Direct
PP2C-like0Direct
Hydantoinase (dihydropyrimidinase)0Direct
BRK domain-like0Direct
Platelet-derived growth factor-like0Direct
Tetramerization domain of potassium channels0Direct
POU-specific domain0.01178Inherited
Tandem AAA-ATPase domain0.02315Inherited
SMAD MH1 domain0.09434Inherited
SMAD domain0.1281Inherited
I set domains0.1868Inherited
Homeodomain0.271Inherited
Fibronectin type III0.2824Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.3143Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.319Inherited
Cadherin0.3558Inherited
Ankyrin repeat0.4535Inherited
HLH, helix-loop-helix DNA-binding domain0.5886Inherited
PDZ domain0.5994Inherited
Classic zinc finger, C2H20.6248Inherited
Transforming growth factor (TGF)-beta0.6993Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Composite domain of metallo-dependent hydrolases0Direct
HIT-like0Direct
BRK domain-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
PP2C-like0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
Doublecortin (DC)0Direct
Cyclin-like0.01307Inherited
SMAD/FHA domain0.04102Inherited
SMAD MH1 domain0.08098Inherited
lambda repressor-like DNA-binding domains0.1571Inherited
Homeodomain-like0.1789Inherited
Subtilisin-like0.2176Inherited
Protease propeptides/inhibitors0.2176Inherited
Cystine-knot cytokines0.2288Inherited
Cadherin-like0.2644Inherited
Fibronectin type III0.269Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.2858Inherited
Class II aaRS and biotin synthetases0.2984Inherited
beta-beta-alpha zinc fingers0.3539Inherited
Ankyrin repeat0.441Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.4533Inherited
HLH, helix-loop-helix DNA-binding domain0.5745Inherited
Immunoglobulin0.728Inherited
PDZ domain-like0.7712Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
103575,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 0Direct
    89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.05366Inherited
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.0544Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.2176Inherited
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.2176Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.2483Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.3033Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.3691Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.4316Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.6158Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    57196,49899,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    103575,81296,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 81296 - E set domains
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.02031Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0514Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.1454Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.1885Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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