SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Zebrafish Anatomy (ZA): anatomical cluster

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + 2:   anatomical structure [ZFA:0000037] <16>(269|288) (269|153|73)
+ 1:   anatomical group [ZFA:0001512] <5>(173|202) (177|125|60)
0:   anatomical cluster [ZFA:0001478] <54>(36|54) (40|28|21)
- 1:   joint [ZFA:0001596] <35>(0|0) (0|0|0)
- 1:   neurocranium [ZFA:0001580] <31>(1|2) (2|0|0)
- 1:   dermatocranium [ZFA:0000863] <24>(1|1) (1|0|0)
- 1:   chondrocranium [ZFA:0001424] <15>(1|2) (3|0|0)
- 1:   pharyngeal arch 3-7 skeleton [ZFA:0000095] <15>(0|1) (1|0|0)
- 1:   neuromast [ZFA:0000243] <14>(0|0) (0|0|0)
- 1:   pleuroperitoneal region [ZFA:0007116] <11>(6|7) (7|2|0)
- 1:   dorsal fin pterygiophore [ZFA:0001419] <10>(0|0) (0|0|0)
- 1:   olfactory region [ZFA:0000351] <10>(2|3) (3|0|0)
- 1:   inner ear [ZFA:0000217] <9>(3|4) (3|0|2)
- 1:   oral region [ZFA:0000590] <9>(2|2) (2|0|1)
- 1:   pectoral girdle [ZFA:0000407] <9>(0|0) (0|0|0)
- 1:   ventral hyoid arch [ZFA:0001402] <9>(1|1) (1|0|0)
- 1:   otic region [ZFA:0000189] <8>(0|0) (0|0|0)
- 1:   palatoquadrate arch [ZFA:0001272] <8>(1|0) (1|0|1)
- 1:   pharyngeal arch 4 skeleton [ZFA:0001231] <8>(0|0) (0|0|0)
- 1:   pharyngeal arch 5 skeleton [ZFA:0001232] <8>(0|0) (0|0|0)
- 1:   cranial vault [ZFA:0005606] <7>(0|0) (0|0|0)
- 1:   dorsal hyoid arch [ZFA:0001401] <7>(1|1) (1|0|0)
- 1:   pharyngeal arch 6 skeleton [ZFA:0001230] <7>(0|0) (0|0|0)
- 1:   anterior segment eye [ZFA:0005566] <6>(0|1) (1|0|0)
- 1:   orbital region [ZFA:0001410] <6>(0|0) (0|0|0)
- 1:   pharyngeal arch 3 skeleton [ZFA:0001228] <6>(0|0) (0|0|0)
- 1:   ventral mandibular arch [ZFA:0001273] <6>(1|2) (1|0|0)
- 1:   infraorbital series [ZFA:0001649] <5>(0|0) (0|0|0)
- 1:   pericardial region [ZFA:0007115] <5>(6|9) (6|3|4)
- 1:   sphenoid region [ZFA:0000290] <5>(0|0) (0|0|0)
- 1:   splanchnocranium [ZFA:0001216] <5>(4|4) (5|1|1)
- 1:   Weberian apparatus [ZFA:0001188] <4>(0|0) (0|0|0)
- 1:   nephron [ZFA:0005282] <4>(0|1) (0|0|0)
- 1:   occipital region [ZFA:0001414] <4>(0|0) (0|0|0)
- 1:   palate [ZFA:0005509] <4>(0|0) (0|0|0)
- 1:   pars superior ear [ZFA:0005409] <4>(1|3) (1|0|1)
- 1:   proliferative region [ZFA:0000098] <4>(0|0) (1|0|0)
- 1:   medial column [ZFA:0000542] <3>(0|0) (0|0|0)
- 1:   pancreatic lobule [ZFA:0005753] <3>(0|0) (0|0|0)
- 1:   pars inferior ear [ZFA:0005410] <3>(0|0) (0|0|0)
- 1:   pharyngeal arch 7 skeleton [ZFA:0001229] <3>(0|1) (1|0|0)
- 1:   posterior segment eye [ZFA:0005567] <3>(5|6) (5|4|3)
- 1:   tooth row [ZFA:0001642] <3>(0|0) (0|0|0)
- 1:   vertebral column [ZFA:0001559] <3>(0|1) (1|0|0)
- 1:   anal fin pterygiophore [ZFA:0001420] <2>(0|0) (0|0|0)
- 1:   lagenar capsule [ZFA:0001627] <2>(0|0) (0|0|0)
- 1:   mandibular arch skeleton [ZFA:0001227] <2>(2|2) (2|1|1)
- 1:   neural complex [ZFA:0001363] <2>(0|0) (0|0|0)
- 1:   pharyngeal arch 2 skeleton [ZFA:0001276] <2>(2|1) (2|0|0)
- 1:   suspensorium [ZFA:0000444] <2>(2|1) (2|0|1)
- 1:   lateral column [ZFA:0000531] <1>(0|0) (0|0|0)
- 1:   midline column [ZFA:0000241] <1>(0|0) (0|0|0)
- 1:   pelvic girdle [ZFA:0000565] <1>(0|0) (0|0|0)
- 1:   bony shelf above orbit [ZFA:0005531](0|0) (0|0|0)
- 1:   intervening zone [ZFA:0001341](0|0) (0|0|0)
- 1:   protoneuromast [ZFA:0005227](0|0) (0|0|0)
- 1:   visceromotor column [ZFA:0000611](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Ras GEF0Direct
Translational machinery components0Direct
PGBD-like0Direct
SRF-like0Direct
Hemopexin-like domain0Direct
Phoshotransferase/anion transport protein0Direct
Cap-Gly domain0Direct
Notch domain0Direct
CalX-like0Direct
Caspase-like0Direct
ADC-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Kazal-type serine protease inhibitors0Direct
Cdc48 domain 2-like0Direct
Class I glutamine amidotransferase-like0Direct
Moesin tail domain0Direct
Aquaporin-like0Direct
Glutathione synthetase ATP-binding domain-like0Direct
Composite domain of metallo-dependent hydrolases0Direct
Plakin repeat0Direct
Glucocorticoid receptor-like (DNA-binding domain)0.03182Inherited
WD40 repeat-like0.09679Inherited
Nuclear receptor ligand-binding domain0.1578Inherited
Cysteine proteinases0.1643Inherited
FnI-like domain0.1756Inherited
NAD(P)-binding Rossmann-fold domains0.2104Inherited
Alkaline phosphatase-like0.2595Inherited
Serine protease inhibitors0.2637Inherited
Cytokine0.3903Inherited
Mitochondrial carrier0.4143Inherited
Cystine-knot cytokines0.4697Inherited
Tropomyosin0.525Inherited
Multidrug efflux transporter AcrB transmembrane domain0.5805Inherited
Carbonic anhydrase0.6977Inherited
EGF/Laminin0.7158Inherited
Homeodomain-like0.7201Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Notch domain0Direct
SRF-like0Direct
Ras GEF0Direct
Caspase catalytic domain0Direct
Hemopexin-like domain0Direct
Plakin repeat0Direct
BCR-homology GTPase activation domain (BH-domain)0Direct
Erythroid transcription factor GATA-10Direct
Connexin430Direct
Cdc48 domain 2-like0Direct
Prohormone convertase 1 pro-domain0Direct
Hydantoinase (dihydropyrimidinase)0Direct
Aquaporin-like0Direct
Cytoplasmic domain of inward rectifier potassium channel0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
Ovomucoid domain III-like0Direct
Class I glutamine amidotransferases (GAT)0Direct
Anion transport protein, cytoplasmic domain0Direct
PWWP domain0Direct
CalX-beta domain0Direct
Cdc48 N-terminal domain-like0Direct
Nitrogenase iron protein-like0Direct
MMP N-terminal domain0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Fibronectin type II module0Direct
Cap-Gly domain0Direct
Moesin tail domain0Direct
Histone lysine methyltransferases0Direct
Ubiquitin-related0Direct
Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta0Direct
Proprotein convertase P-domain0Direct
V set domains (antibody variable domain-like)0Direct
P4 origin-binding domain-like0Direct
C5 cytosine-specific DNA methylase, DCM0Direct
Growth factor receptor domain0.02052Inherited
T-box0.03726Inherited
Paired domain0.06195Inherited
Nuclear receptor ligand-binding domain0.1219Inherited
Motor proteins0.1364Inherited
Tetratricopeptide repeat (TPR)0.1415Inherited
Ubiquitin carboxyl-terminal hydrolase, UCH0.1423Inherited
Nuclear receptor0.1474Inherited
Multidrug efflux transporter AcrB transmembrane domain0.1578Inherited
WD40-repeat0.2017Inherited
LIM domain0.2497Inherited
Zf-UBP0.2946Inherited
Fibroblast growth factors (FGF)0.3489Inherited
Transforming growth factor (TGF)-beta0.3944Inherited
EGF-type module0.416Inherited
Tropomyosin0.4829Inherited
Homeodomain0.5275Inherited
HMG-box0.5654Inherited
VWC domain0.5683Inherited
Carbonic anhydrase0.6628Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Translational machinery components0Direct
Cap-Gly domain0Direct
Kazal-type serine protease inhibitors0Direct
Composite domain of metallo-dependent hydrolases0Direct
ADC-like0Direct
Glutathione synthetase ATP-binding domain-like0Direct
Plakin repeat0Direct
Caspase-like0Direct
Hemopexin-like domain0Direct
Moesin tail domain0Direct
CalX-like0Direct
SRF-like0Direct
Notch domain0Direct
Class I glutamine amidotransferase-like0Direct
Aquaporin-like0Direct
Cdc48 domain 2-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
PGBD-like0Direct
Phoshotransferase/anion transport protein0Direct
Ras GEF0Direct
Glucocorticoid receptor-like (DNA-binding domain)0.02304Inherited
WD40 repeat-like0.07713Inherited
Nuclear receptor ligand-binding domain0.1321Inherited
Cysteine proteinases0.1381Inherited
FnI-like domain0.1484Inherited
NAD(P)-binding Rossmann-fold domains0.1807Inherited
Alkaline phosphatase-like0.228Inherited
Serine protease inhibitors0.2327Inherited
Cytokine0.3562Inherited
Mitochondrial carrier0.3798Inherited
Quinoprotein alcohol dehydrogenase-like0.4137Inherited
Cystine-knot cytokines0.436Inherited
Tropomyosin0.4939Inherited
Ankyrin repeat0.5303Inherited
Multidrug efflux transporter AcrB transmembrane domain0.5516Inherited
HMG-box0.5785Inherited
Carbonic anhydrase0.6739Inherited
EGF/Laminin0.6932Inherited
Homeodomain-like0.6978Inherited
UBA-like0.7883Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    55486,50923
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49785,57184
  • 49785 - Galactose-binding domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    57184,57603
  • 57184 - Growth factor receptor domain
  • 57603 - FnI-like domain
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    46966,47473
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0Direct
    57196,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 0Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0Direct
    81324,81324
  • 81324 - Voltage-gated potassium channels
  • 81324 - Voltage-gated potassium channels
  • 0Direct
    54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    81324,81296
  • 81324 - Voltage-gated potassium channels
  • 81296 - E set domains
  • 0Direct
    75399,75399
  • 75399 - Plakin repeat
  • 75399 - Plakin repeat
  • 0Direct
    57440,57440
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 0Direct
    47986,52129
  • 47986 - DEATH domain
  • 52129 - Caspase-like
  • 0Direct
    48097,56112
  • 48097 - Regulator of G-protein signaling, RGS
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    47090,55486
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 0Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    90193,90193
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    141072,141072
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 0Direct
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.06084Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.2256Inherited
    50156,50156
  • 50156 - PDZ domain-like
  • 50156 - PDZ domain-like
  • 0.2791Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.3388Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.9498Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    47090,55486,50923
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0Direct
    75399,75399,75399
  • 75399 - Plakin repeat
  • 75399 - Plakin repeat
  • 75399 - Plakin repeat
  • 0Direct
    57184,57196,57196
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0Direct
    54897,52743,49785
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0Direct
    57196,57196,90193
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 0Direct
    57196,90193,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    48726,49265,48726
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    46966,46966,47473
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0Direct
    57196,57184,57196
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0Direct
    90193,90193,90193
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    57184,57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    52743,49785,57184
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.1367Inherited
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.2298Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.5064Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)