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Zebrafish Anatomy (ZA): cavitated compound organ

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + 2:   anatomical structure [ZFA:0000037] <12>(251|265) (252|144|70)
+ + 2:   whole organism [ZFA:0001094] <8>(248|264) (249|142|68)
+ 1:   compound organ [ZFA:0000496] <12>(78|86) (81|54|26)
0:   cavitated compound organ [ZFA:0001490] <15>(57|67) (59|41|16)
- 1:   brain [ZFA:0000008] <12>(12|15) (13|12|6)
- 1:   heart [ZFA:0000114] <12>(3|4) (4|2|2)
- 1:   spinal cord [ZFA:0000075] <12>(2|1) (2|1|0)
- 1:   eye [ZFA:0000107] <10>(10|11) (10|9|5)
- 1:   kidney [ZFA:0000529] <8>(0|1) (0|1|0)
- 1:   blood vasculature [ZFA:0001079] <7>(6|7) (6|3|1)
- 1:   heart tube [ZFA:0000360] <7>(0|0) (1|0|0)
- 1:   intestine [ZFA:0001338] <7>(1|0) (1|0|0)
- 1:   atrium [ZFA:0000471] <6>(0|0) (0|0|0)
- 1:   cardiac ventricle [ZFA:0000009] <6>(0|1) (1|1|1)
- 1:   pronephros [ZFA:0000151] <6>(1|2) (1|1|0)
- 1:   otolith organ [ZFA:0000559] <5>(1|0) (1|0|0)
- 1:   peripheral olfactory organ [ZFA:0000047] <5>(0|0) (0|0|0)
- 1:   swim bladder [ZFA:0000076] <5>(1|1) (1|0|0)
- 1:   gonad [ZFA:0000413] <4>(1|1) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Sec7 domain0Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Nucleotide cyclase0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
CoA-dependent acyltransferases0Direct
BPTI-like0Direct
BRK domain-like0Direct
Tricorn protease domain 20Direct
Composite domain of metallo-dependent hydrolases0Direct
JAB1/MPN domain0Direct
CCCH zinc finger0Direct
Nucleotidylyl transferase0Direct
Translation proteins0Direct
SNARE fusion complex0Direct
SRF-like0Direct
BRCT domain0Direct
ADC-like0Direct
F-box domain0Direct
Doublecortin (DC)0Direct
Cap-Gly domain0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
Class II aaRS and biotin synthetases0Direct
LCCL domain0Direct
Cdc48 domain 2-like0Direct
Metallo-dependent hydrolases0Direct
PP2C-like0Direct
Single hybrid motif0Direct
PLC-like phosphodiesterases0Direct
Class II aaRS ABD-related0Direct
Glutathione synthetase ATP-binding domain-like0Direct
Translational machinery components0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Protein kinase-like (PK-like)0.1004Inherited
Mitochondrial carrier0.1609Inherited
P-loop containing nucleoside triphosphate hydrolases0.2104Inherited
WD40 repeat-like0.2271Inherited
ACT-like0.2749Inherited
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains0.2749Inherited
Ras GEF0.3617Inherited
Serine protease inhibitors0.3617Inherited
Cadherin-like0.5301Inherited
lambda repressor-like DNA-binding domains0.5551Inherited
Cyclin-like0.5776Inherited
Fibronectin type III0.5893Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.6366Inherited
Cystine-knot cytokines0.6536Inherited
Tropomyosin0.6579Inherited
Carbonic anhydrase0.7254Inherited
Protease propeptides/inhibitors0.7254Inherited
beta-beta-alpha zinc fingers0.7466Inherited
Subtilisin-like0.7479Inherited
Hormone receptor domain0.7479Inherited
Multidrug efflux transporter AcrB transmembrane domain0.7479Inherited
PDZ domain-like0.7729Inherited
Homeodomain-like0.7818Inherited
NAD(P)-binding Rossmann-fold domains0.9771Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Histone lysine methyltransferases0Direct
Elongation factors0Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0Direct
Cdc48 N-terminal domain-like0Direct
SNARE fusion complex0Direct
Chromo domain0Direct
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A0Direct
Pentraxin (pentaxin)0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
PP2C-like0Direct
Cdc48 domain 2-like0Direct
SWIRM domain0Direct
Ovomucoid domain III-like0Direct
C5 cytosine-specific DNA methylase, DCM0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
Sec7 domain0Direct
Connexin430Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0Direct
Extracellular domain of cell surface receptors0Direct
F-box domain0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
Mammalian PLC0Direct
Cap-Gly domain0Direct
BRK domain-like0Direct
Noncollagenous (NC1) domain of collagen IV0Direct
Small Kunitz-type inhibitors & BPTI-like toxins0Direct
Tetramerization domain of potassium channels0Direct
LCCL domain0Direct
Biotinyl/lipoyl-carrier proteins and domains0Direct
Anticodon-binding domain of Class II aaRS0Direct
SRF-like0Direct
Erythroid transcription factor GATA-10Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Hydantoinase (dihydropyrimidinase)0Direct
Adenylyl and guanylyl cyclase catalytic domain0Direct
Platelet-derived growth factor-like0Direct
Glycerophosphoryl diester phosphodiesterase0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
PWWP domain0Direct
CCCH zinc finger0Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0Direct
Pyridoxal-dependent decarboxylase0Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Doublecortin (DC)0Direct
Tetratricopeptide repeat (TPR)0.04988Inherited
Tandem AAA-ATPase domain0.08455Inherited
WD40-repeat0.1705Inherited
POU-specific domain0.1759Inherited
Motor proteins0.1818Inherited
LIM domain0.2309Inherited
Phenylalanine metabolism regulatory domain0.2374Inherited
Multidrug efflux transporter AcrB transmembrane domain0.2374Inherited
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains0.2374Inherited
Ras GEF0.3197Inherited
DEATH domain, DD0.4834Inherited
T-box0.4901Inherited
Fibronectin type III0.5242Inherited
Cadherin0.536Inherited
Tropomyosin0.6128Inherited
I set domains0.6187Inherited
Carbonic anhydrase0.6892Inherited
Hormone receptor domain0.7162Inherited
PDZ domain0.7416Inherited
Classic zinc finger, C2H20.7855Inherited
Transforming growth factor (TGF)-beta0.7887Inherited
Homeodomain0.8295Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Single hybrid motif0Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0Direct
PLC-like phosphodiesterases0Direct
Glutathione synthetase ATP-binding domain-like0Direct
Nucleotidylyl transferase0Direct
F-box domain0Direct
ADC-like0Direct
PP2C-like0Direct
SNARE fusion complex0Direct
Nucleotide cyclase0Direct
Metallo-dependent hydrolases0Direct
Doublecortin (DC)0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
JAB1/MPN domain0Direct
Tricorn protease domain 20Direct
SRF-like0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
CCCH zinc finger0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Class II aaRS and biotin synthetases0Direct
BRCT domain0Direct
Composite domain of metallo-dependent hydrolases0Direct
Translation proteins0Direct
Cdc48 domain 2-like0Direct
Sec7 domain0Direct
BRK domain-like0Direct
Translational machinery components0Direct
BPTI-like0Direct
LCCL domain0Direct
Cap-Gly domain0Direct
CoA-dependent acyltransferases0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Class II aaRS ABD-related0Direct
Protein kinase-like (PK-like)0.07962Inherited
Mitochondrial carrier0.1328Inherited
P-loop containing nucleoside triphosphate hydrolases0.1793Inherited
WD40 repeat-like0.1946Inherited
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains0.2417Inherited
ACT-like0.2417Inherited
Ras GEF0.3239Inherited
Serine protease inhibitors0.3239Inherited
Cadherin-like0.4958Inherited
lambda repressor-like DNA-binding domains0.5212Inherited
p53-like transcription factors0.5311Inherited
Cyclin-like0.5446Inherited
Fibronectin type III0.5566Inherited
Immunoglobulin0.573Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.6064Inherited
Cystine-knot cytokines0.624Inherited
Tropomyosin0.6285Inherited
Protease propeptides/inhibitors0.7003Inherited
Carbonic anhydrase0.7003Inherited
beta-beta-alpha zinc fingers0.7245Inherited
Subtilisin-like0.7261Inherited
Multidrug efflux transporter AcrB transmembrane domain0.7261Inherited
Hormone receptor domain0.7261Inherited
PDZ domain-like0.7525Inherited
Homeodomain-like0.7624Inherited
NAD(P)-binding Rossmann-fold domains0.9761Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0Direct
    50978,50998
  • 50978 - WD40 repeat-like
  • 50998 - Quinoprotein alcohol dehydrogenase-like
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0Direct
    52799,49562
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54001,143791
  • 54001 - Cysteine proteinases
  • 143791 - DUSP-like
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    48425,50729
  • 48425 - Sec7 domain
  • 50729 - PH domain-like
  • 0Direct
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0Direct
    89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0Direct
    46966,47473
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0Direct
    103575,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57362,57362
  • 57362 - BPTI-like
  • 57362 - BPTI-like
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0Direct
    46785,46785
  • 46785 - "Winged helix" DNA-binding domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.02888Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.05155Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.1328Inherited
    55021,56534
  • 55021 - ACT-like
  • 56534 - Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
  • 0.2417Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.3Inherited
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.3239Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.4012Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.4844Inherited
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.4926Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.5212Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.5823Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.6178Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.6517Inherited
    50156,50156
  • 50156 - PDZ domain-like
  • 50156 - PDZ domain-like
  • 0.6912Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    103575,81296,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 81296 - E set domains
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    46966,46966,47473
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.2065Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.4226Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.4819Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.7854Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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