SUPERFAMILY HMM library and genome assignments server
New 1.73 HMM library and genome assignments

SCOP hierarchy

SCOP classification
Root:   SCOP 1.69 Hierarchy in SUPERFAMILY [ 0]
Classes:   All alpha proteins [ 46456] (218)
  All beta proteins [ 48724] (144)
  Alpha and beta proteins (a/b) [ 51349] (136)
  Mainly parallel beta sheets (beta-alpha-beta units)
  Alpha and beta proteins (a+b) [ 53931] (279)
  Mainly antiparallel beta sheets (segregated alpha and beta regions)
  Multi-domain proteins (alpha and beta) [ 56572] (46)
  Folds consisting of two or more domains belonging to different classes
  Membrane and cell surface proteins and peptides [ 56835] (47)
  Does not include proteins in the immune system
  Small proteins [ 56992] (75)
  Usually dominated by metal ligand, heme, and/or disulfide bridges
  Coiled coil proteins [ 57942] (6)
  Not a true class
  Low resolution protein structures [ 58117] (24)
  Not a true class
  Peptides [ 58231] (116)
  Peptides and fragments. Not a true class
  Designed proteins [ 58788] (42)
  Experimental structures of proteins with essentially non-natural sequences. Not a true class
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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