SUPERFAMILY 1.75 HMM library and genome assignments server

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Translation initiation factor 2 beta, aIF2beta, N-terminal domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosome binding domain-like [ 100965] (2)
Superfamily:   Translation initiation factor 2 beta, aIF2beta, N-terminal domain [ 100966]
Families:   Translation initiation factor 2 beta, aIF2beta, N-terminal domain [ 100967]


Superfamily statistics
Genomes (667) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,596 0 2
Proteins 1,591 0 2


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)whole plant0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)gamete0InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processProtein biosynthesis0InformativeDirect
DomainZinc-finger0.00000002285Moderately InformativeDirect
Molecular functionNucleotide-binding0.9772Least InformativeInherited
Molecular functionGTP-binding0.000000053InformativeDirect
Post-translational modificationInitiation factor0InformativeDirect
Post-translational modificationPhosphoprotein0.00009055Least InformativeDirect
Post-translational modificationIsopeptide bond0.0000001132Moderately InformativeDirect
Post-translational modificationUbl conjugation0.000003005Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Translation initiation factor 2 beta, aIF2beta, N-terminal domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the Translation initiation factor 2 beta, aIF2beta, N-terminal domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]