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Hypothetical protein c14orf129, hspc210 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   N domain of copper amine oxidase-like [ 55382] (5)
Superfamily:   Hypothetical protein c14orf129, hspc210 [ 103107]
Families:   Hypothetical protein c14orf129, hspc210 [ 103108]

Superfamily statistics
Genomes (429) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 880 2,164 1
Proteins 880 2,158 1

Functional annotation
General category Other
Detailed category Unknown function

Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular component organization or biogenesis 0.1359 Least Informative Inherited
Biological Process (BP) cellular localization 0.0001197 Moderately Informative Direct
Biological Process (BP) organelle organization 0.003921 Moderately Informative Inherited
Biological Process (BP) organelle localization 0.000000008081 Informative Direct
Biological Process (BP) mitochondrion organization 0.0000006532 Informative Direct
Molecular Function (MF) binding 0.9608 Least Informative Inherited
Molecular Function (MF) nucleic acid binding 0.009225 Moderately Informative Inherited
Molecular Function (MF) RNA binding 0.00005573 Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.000516 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.3027 Least Informative Inherited
Cellular Component (CC) supramolecular polymer 0.000001218 Informative Direct
Cellular Component (CC) contractile fiber part 0.000000007002 Highly Informative Direct

Document: GO annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)general pace of development variant0Least InformativeDirect
Worm Phenotype (WP)larval development variant0Least InformativeDirect
Worm Phenotype (WP)larval growth variant0Least InformativeDirect
Worm Phenotype (WP)retarded heterochronic variations0Least InformativeDirect
Worm Phenotype (WP)larval lethal0Least InformativeDirect
Worm Phenotype (WP)sterile progeny0Moderately InformativeDirect

Document: WP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentCytoplasm0Least InformativeDirect
DomainRepeat0Least InformativeDirect
DomainTPR repeat0Highly InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Worm Phenotype (WP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Browse and view proteins in genomes which have different domain combinations including a Hypothetical protein c14orf129, hspc210 domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Hypothetical protein c14orf129, hspc210 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Worm Phenotype (WP) · UniProtKB KeyWords (KW) · Internal database links ]