SUPERFAMILY 1.75 HMM library and genome assignments server


HD-domain/PDEase-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   HD-domain/PDEase-like [ 109603]
Superfamily:   HD-domain/PDEase-like [ 109604] (5)
Families:   HD domain [ 101340] (13)
  PDEase [ 48548] (6)
  modified HD domain [ 116973]
  MioX-like [ 140769]
  Ppx associated domain [ 140773]


Superfamily statistics
Genomes (3,158) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 34,142 160,707 45
Proteins 33,471 158,378 45


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)regulation of metabolic process11Least InformativeInherited
Biological Process (BP)multicellular organismal process10.05194Least InformativeInherited
Biological Process (BP)single-organism metabolic process11.606e-05Least InformativeInherited
Biological Process (BP)regulation of cellular process10.888Least InformativeInherited
Biological Process (BP)response to stimulus10.02784Least InformativeInherited
Biological Process (BP)regulation of biosynthetic process0.69411Moderately InformativeInherited
Biological Process (BP)negative regulation of metabolic process0.34990.007832Moderately InformativeInherited
Biological Process (BP)negative regulation of cellular process0.96570.1977Moderately InformativeInherited
Biological Process (BP)organic hydroxy compound metabolic process0.00027610.5627Moderately InformativeInherited
Biological Process (BP)carbohydrate metabolic process0.021271Moderately InformativeInherited
Biological Process (BP)reproduction0.78030.1942Moderately InformativeInherited
Biological Process (BP)system process0.42490Moderately InformativeInherited
Biological Process (BP)response to abiotic stimulus0.60020.0004264Moderately InformativeInherited
Biological Process (BP)negative regulation of biosynthetic process0.065170.0002537InformativeInherited
Biological Process (BP)alcohol metabolic process5.333e-061InformativeInherited
Biological Process (BP)single-organism behavior0.036830.9382InformativeInherited
Biological Process (BP)single organism reproductive process0.11680.001899InformativeInherited
Biological Process (BP)carbohydrate catabolic process4.914e-050.7211InformativeInherited
Biological Process (BP)cellular carbohydrate metabolic process2.06e-050.2852InformativeInherited
Biological Process (BP)regulation of lipid metabolic process0.003656.893e-08InformativeInherited
Biological Process (BP)response to light stimulus0.045481.669e-09InformativeInherited
Biological Process (BP)defense response0.54240.01215InformativeInherited
Biological Process (BP)cellular carbohydrate catabolic process6.748e-134.752e-07Highly InformativeDirect
Biological Process (BP)alcohol catabolic process3.035e-112.461e-07Highly InformativeDirect
Biological Process (BP)negative regulation of hormone metabolic process2.569e-060Highly InformativeDirect
Biological Process (BP)negative regulation of lipid biosynthetic process2.389e-055.618e-15Highly InformativeDirect
Biological Process (BP)regulation of steroid biosynthetic process4.46e-050Highly InformativeDirect
Biological Process (BP)neuromuscular process0.00010565.063e-06Highly InformativeDirect
Biological Process (BP)learning or memory0.00074613.77e-15Highly InformativeDirect
Biological Process (BP)polyol metabolic process2.79e-090.001499Highly InformativeInherited
Molecular Function (MF)binding11Least InformativeInherited
Molecular Function (MF)hydrolase activity0.74040Least InformativeInherited
Molecular Function (MF)cation binding0.0013691Moderately InformativeInherited
Molecular Function (MF)oxidoreductase activity0.0039141Moderately InformativeInherited
Molecular Function (MF)hydrolase activity, acting on ester bonds0.023960Moderately InformativeInherited
Molecular Function (MF)transition metal ion binding7.553e-064.984e-05InformativeDirect
Molecular Function (MF)phosphoric ester hydrolase activity0.00030490InformativeDirect
Molecular Function (MF)oxidoreductase activity, acting on CH-OH group of donors0.13260.2069InformativeInherited
Molecular Function (MF)oxidoreductase activity, acting on single donors with incorporation of molecular oxygen2.614e-113.872e-10Highly InformativeDirect
Molecular Function (MF)phosphoric diester hydrolase activity0.00011410Highly InformativeDirect
Molecular Function (MF)iron ion binding0.00036290.003462Highly InformativeInherited
Molecular Function (MF)oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor0.0052560.1401Highly InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) heterocycle metabolic process 0 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 1.944e-15 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 3.295e-13 Least Informative Direct
Biological Process (BP) single-organism metabolic process 1.606e-05 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 0.001524 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) localization 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.05194 Least Informative Inherited
Biological Process (BP) regulation of cellular process 0.888 Least Informative Inherited
Biological Process (BP) response to stimulus 0.02784 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 1 Least Informative Inherited
Biological Process (BP) system process 0 Moderately Informative Direct
Biological Process (BP) response to abiotic stimulus 0.0004264 Moderately Informative Direct
Biological Process (BP) organic cyclic compound catabolic process 0 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 0 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0 Moderately Informative Direct
Biological Process (BP) organonitrogen compound catabolic process 2.462e-14 Moderately Informative Direct
Biological Process (BP) cellular catabolic process 1.444e-13 Moderately Informative Direct
Biological Process (BP) response to oxygen-containing compound 2.936e-10 Moderately Informative Direct
Biological Process (BP) cellular response to chemical stimulus 1.989e-07 Moderately Informative Direct
Biological Process (BP) response to organic substance 2.014e-06 Moderately Informative Direct
Biological Process (BP) multi-organism process 2.792e-06 Moderately Informative Direct
Biological Process (BP) regulation of localization 0.0006878 Moderately Informative Direct
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) immune system process 0.01483 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 0.003945 Moderately Informative Inherited
Biological Process (BP) organic hydroxy compound metabolic process 0.5627 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) reproduction 0.1942 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of response to stimulus 0.8581 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.1977 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.007832 Moderately Informative Inherited
Biological Process (BP) regulation of phosphate metabolic process 0.8837 Moderately Informative Inherited
Biological Process (BP) signal transduction 0.005228 Moderately Informative Inherited
Biological Process (BP) carbohydrate metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of signal transduction 1 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 1 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 1 Moderately Informative Inherited
Biological Process (BP) cellular localization 1 Moderately Informative Inherited
Biological Process (BP) organic substance transport 1 Moderately Informative Inherited
Biological Process (BP) organelle organization 1 Moderately Informative Inherited
Biological Process (BP) tissue development 0.4492 Moderately Informative Inherited
Biological Process (BP) homeostatic process 0.6799 Moderately Informative Inherited
Biological Process (BP) regulation of lipid metabolic process 6.893e-08 Informative Direct
Biological Process (BP) response to light stimulus 1.669e-09 Informative Direct
Biological Process (BP) negative regulation of biosynthetic process 0.0002537 Informative Direct
Biological Process (BP) organophosphate catabolic process 0 Informative Direct
Biological Process (BP) nucleobase-containing compound catabolic process 0 Informative Direct
Biological Process (BP) carbohydrate derivative catabolic process 0 Informative Direct
Biological Process (BP) cellular response to oxygen-containing compound 1.919e-13 Informative Direct
Biological Process (BP) blood circulation 2.338e-11 Informative Direct
Biological Process (BP) negative regulation of transport 2.346e-11 Informative Direct
Biological Process (BP) intracellular signal transduction 3.337e-06 Informative Direct
Biological Process (BP) regulation of establishment of protein localization 4.824e-06 Informative Direct
Biological Process (BP) localization of cell 8.272e-06 Informative Direct
Biological Process (BP) regulation of intracellular transport 9.948e-06 Informative Direct
Biological Process (BP) muscle system process 4.393e-05 Informative Direct
Biological Process (BP) cellular response to nitrogen compound 5.439e-05 Informative Direct
Biological Process (BP) response to organonitrogen compound 0.0002527 Informative Direct
Biological Process (BP) regulation of defense response 0.0003705 Informative Direct
Biological Process (BP) regulation of purine nucleotide metabolic process 0.07702 Informative Inherited
Biological Process (BP) response to cytokine stimulus 0.01897 Informative Inherited
Biological Process (BP) regulation of secretion 1 Informative Inherited
Biological Process (BP) regulation of cellular component movement 0.1627 Informative Inherited
Biological Process (BP) protein localization to organelle 0.04445 Informative Inherited
Biological Process (BP) cellular response to endogenous stimulus 0.004791 Informative Inherited
Biological Process (BP) response to organic cyclic compound 0.07444 Informative Inherited
Biological Process (BP) response to other organism 0.119 Informative Inherited
Biological Process (BP) epithelium development 0.04148 Informative Inherited
Biological Process (BP) sensory organ development 0.1031 Informative Inherited
Biological Process (BP) alcohol metabolic process 1 Informative Inherited
Biological Process (BP) purine ribonucleotide metabolic process 0.1822 Informative Inherited
Biological Process (BP) nucleoside triphosphate metabolic process 1 Informative Inherited
Biological Process (BP) single-organism behavior 0.9382 Informative Inherited
Biological Process (BP) single organism reproductive process 0.001899 Informative Inherited
Biological Process (BP) growth 0.163 Informative Inherited
Biological Process (BP) multi-multicellular organism process 0.03166 Informative Inherited
Biological Process (BP) multicellular organismal reproductive process 1 Informative Inherited
Biological Process (BP) response to lipid 0.001269 Informative Inherited
Biological Process (BP) regulation of response to external stimulus 0.001329 Informative Inherited
Biological Process (BP) negative regulation of nitrogen compound metabolic process 0.3308 Informative Inherited
Biological Process (BP) cellular component movement 0.01299 Informative Inherited
Biological Process (BP) locomotion 0.06209 Informative Inherited
Biological Process (BP) carbohydrate catabolic process 0.7211 Informative Inherited
Biological Process (BP) cellular carbohydrate metabolic process 0.2852 Informative Inherited
Biological Process (BP) regulation of intracellular protein kinase cascade 0.03347 Informative Inherited
Biological Process (BP) regulation of body fluid levels 0.009495 Informative Inherited
Biological Process (BP) response to wounding 0.1071 Informative Inherited
Biological Process (BP) regulation of system process 0.3616 Informative Inherited
Biological Process (BP) mitochondrion organization 0.00907 Informative Inherited
Biological Process (BP) cytoplasmic transport 0.1759 Informative Inherited
Biological Process (BP) protein transport 0.3484 Informative Inherited
Biological Process (BP) defense response 0.01215 Informative Inherited
Biological Process (BP) cellular carbohydrate catabolic process 4.752e-07 Highly Informative Direct
Biological Process (BP) alcohol catabolic process 2.461e-07 Highly Informative Direct
Biological Process (BP) negative regulation of hormone metabolic process 0 Highly Informative Direct
Biological Process (BP) negative regulation of lipid biosynthetic process 5.618e-15 Highly Informative Direct
Biological Process (BP) regulation of steroid biosynthetic process 0 Highly Informative Direct
Biological Process (BP) neuromuscular process 5.063e-06 Highly Informative Direct
Biological Process (BP) learning or memory 3.77e-15 Highly Informative Direct
Biological Process (BP) cellular response to biotic stimulus 0 Highly Informative Direct
Biological Process (BP) response to drug 0 Highly Informative Direct
Biological Process (BP) leukocyte migration 0 Highly Informative Direct
Biological Process (BP) response to purine-containing compound 3.693e-12 Highly Informative Direct
Biological Process (BP) response to lipopolysaccharide 4.973e-12 Highly Informative Direct
Biological Process (BP) epithelial cell development 4.257e-10 Highly Informative Direct
Biological Process (BP) leukocyte homeostasis 6.721e-10 Highly Informative Direct
Biological Process (BP) vascular process in circulatory system 7.508e-09 Highly Informative Direct
Biological Process (BP) protein localization to mitochondrion 9.681e-09 Highly Informative Direct
Biological Process (BP) deoxyribonucleoside triphosphate metabolic process 1.606e-08 Highly Informative Direct
Biological Process (BP) negative regulation of intracellular transport 8.056e-08 Highly Informative Direct
Biological Process (BP) regulation of protein localization to nucleus 1.655e-07 Highly Informative Direct
Biological Process (BP) retina development in camera-type eye 1.993e-07 Highly Informative Direct
Biological Process (BP) regulation of cyclic nucleotide metabolic process 1.079e-06 Highly Informative Direct
Biological Process (BP) negative regulation of protein transport 1.36e-06 Highly Informative Direct
Biological Process (BP) mitochondrial transport 4.016e-06 Highly Informative Direct
Biological Process (BP) positive regulation of response to external stimulus 7.944e-06 Highly Informative Direct
Biological Process (BP) deoxyribose phosphate metabolic process 1.082e-05 Highly Informative Direct
Biological Process (BP) positive regulation of defense response 5.302e-05 Highly Informative Direct
Biological Process (BP) regulation of intracellular protein transport 6.147e-05 Highly Informative Direct
Biological Process (BP) hemostasis 8.754e-05 Highly Informative Direct
Biological Process (BP) chemotaxis 0.0001284 Highly Informative Direct
Biological Process (BP) establishment of protein localization to organelle 0.000223 Highly Informative Direct
Biological Process (BP) regulation of muscle contraction 0.0002536 Highly Informative Direct
Biological Process (BP) aging 0.0005453 Highly Informative Direct
Biological Process (BP) coagulation 0.0005776 Highly Informative Direct
Biological Process (BP) multi-organism behavior 0.0005832 Highly Informative Direct
Biological Process (BP) regulation of nucleocytoplasmic transport 0.0007302 Highly Informative Direct
Biological Process (BP) regulation of hormone secretion 0.003574 Highly Informative Inherited
Biological Process (BP) cell fate commitment 0.6148 Highly Informative Inherited
Biological Process (BP) deoxyribonucleotide metabolic process 0.006702 Highly Informative Inherited
Biological Process (BP) polyol metabolic process 0.001499 Highly Informative Inherited
Biological Process (BP) sensory perception 0.4119 Highly Informative Inherited
Biological Process (BP) wound healing 0.008848 Highly Informative Inherited
Biological Process (BP) purine ribonucleotide catabolic process 1 Highly Informative Inherited
Biological Process (BP) regulation of peptide transport 0.01609 Highly Informative Inherited
Molecular Function (MF) hydrolase activity 0 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) hydrolase activity, acting on ester bonds 0 Moderately Informative Direct
Molecular Function (MF) anion binding 2.21e-05 Moderately Informative Direct
Molecular Function (MF) cation binding 1 Moderately Informative Inherited
Molecular Function (MF) oxidoreductase activity 1 Moderately Informative Inherited
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.7805 Moderately Informative Inherited
Molecular Function (MF) transition metal ion binding 4.984e-05 Informative Direct
Molecular Function (MF) phosphoric ester hydrolase activity 0 Informative Direct
Molecular Function (MF) nucleotide binding 0 Informative Direct
Molecular Function (MF) oxidoreductase activity, acting on CH-OH group of donors 0.2069 Informative Inherited
Molecular Function (MF) oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 3.872e-10 Highly Informative Direct
Molecular Function (MF) phosphoric diester hydrolase activity 0 Highly Informative Direct
Molecular Function (MF) drug binding 0 Highly Informative Direct
Molecular Function (MF) iron ion binding 0.003462 Highly Informative Inherited
Molecular Function (MF) oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.1401 Highly Informative Inherited
Cellular Component (CC) membrane 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cell projection 0.1318 Moderately Informative Inherited
Cellular Component (CC) synapse part 0.008322 Informative Inherited
Cellular Component (CC) perinuclear region of cytoplasm 4.92e-08 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect
Enzyme Commission (EC)Acting on ester bonds0Least InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0.7809Least InformativeInherited
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)In phosphorous-containing anhydrides0Moderately InformativeDirect
Enzyme Commission (EC)Phosphoric diester hydrolases0Moderately InformativeDirect
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compoun0Moderately InformativeDirect
Enzyme Commission (EC)Diphosphotransferases0InformativeDirect
Enzyme Commission (EC)Acting on single donors with incorporation of mole2.853e-07InformativeDirect
Enzyme Commission (EC)[Protein-PII] uridylyltransferase0Highly InformativeDirect
Enzyme Commission (EC)GTP diphosphokinase0Highly InformativeDirect
Enzyme Commission (EC)3',5'-cyclic-nucleotide phosphodiesterase0Highly InformativeDirect
Enzyme Commission (EC)Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase0Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.5759Least InformativeInherited
Disease Ontology (DO)leukemia0.05268Moderately InformativeInherited
Disease Ontology (DO)chronic leukemia0.0003474InformativeDirect
Disease Ontology (DO)lymphoblastic leukemia0.0008809InformativeDirect
Disease Ontology (DO)chronic lymphocytic leukemia1.706e-05Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Growth abnormality0.0585Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of body weight0.005696InformativeInherited
Phenotypic Abnormality (PA)Obesity1.196e-05Highly InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0.7363Least InformativeInherited
Mammalian Phenotype (MP)abnormal somatic nervous system morphology0.1414Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal eye morphology0.2571Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal neuron morphology0.3829Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal retinal neuronal layer morphology0.01214InformativeInherited
Mammalian Phenotype (MP)abnormal neuron number0.03541InformativeInherited
Mammalian Phenotype (MP)decreased retinal photoreceptor cell number0.0001177Highly InformativeDirect
Mammalian Phenotype (MP)neurodegeneration0.02662Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details) Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect

Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)viable0Least InformativeDirect

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0.1429Least InformativeInherited
Plant ANatomical entity (PAN)whole plant0.2715Least InformativeInherited
Plant ANatomical entity (PAN)root system0.4034Least InformativeInherited
Plant ANatomical entity (PAN)vascular system1.579e-06InformativeDirect
Plant ANatomical entity (PAN)portion of ground tissue2.308e-05InformativeDirect
Plant ANatomical entity (PAN)fruit0.0004173InformativeDirect
Plant ANatomical entity (PAN)root stele2.485e-06Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases1.149e-11Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups8.393e-08Least InformativeDirect
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Nucleotidyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Ligases0Moderately InformativeDirect
Enzyme Commission (EC)Transferring one-carbon groups1Moderately InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases1Moderately InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides1Moderately InformativeInherited
Enzyme Commission (EC)Phosphoric diester hydrolases0InformativeDirect
Enzyme Commission (EC)In phosphorous-containing anhydrides0InformativeDirect
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compounds0InformativeDirect
Enzyme Commission (EC)Acting on single donors with incorporation of molecular oxygen6.457e-07InformativeDirect
Enzyme Commission (EC)Diphosphotransferases0Highly InformativeDirect
Enzyme Commission (EC)[Protein-PII] uridylyltransferase0Highly InformativeDirect
Enzyme Commission (EC)Diphosphoric monoester hydrolases0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processProtein biosynthesis0InformativeDirect
Biological processNitrogen fixation1.088e-06InformativeDirect
Biological processSensory transduction0.000435InformativeDirect
Biological processVision4.174e-07Highly InformativeDirect
Biological processAntiviral defense4.995e-06Highly InformativeDirect
Cellular componentMembrane1.202e-05Least InformativeDirect
Cellular componentCell membrane0Moderately InformativeDirect
DomainRepeat6.97e-11Least InformativeDirect
DomainTransmembrane2.017e-09Least InformativeDirect
Molecular functionNucleotide-binding3.314e-08Least InformativeDirect
Molecular functionMagnesium6.35e-09Moderately InformativeDirect
Molecular functionRNA-binding6.382e-06Moderately InformativeDirect
Molecular functionCalmodulin-binding0.0002138InformativeDirect
Molecular functioncAMP0Highly InformativeDirect
Molecular functioncGMP0Highly InformativeDirect
Molecular functioncAMP-binding4.196e-05Highly InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationTransferase1Least InformativeInherited
Post-translational modificationLigase0Moderately InformativeDirect
Post-translational modificationNuclease0Moderately InformativeDirect
Post-translational modificationNucleotidyltransferase0Moderately InformativeDirect
Post-translational modificationAminoacyl-tRNA synthetase0InformativeDirect
Post-translational modificationEndonuclease1.896e-13InformativeDirect
Post-translational modificationPrenylation9.083e-16InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)aromatic compound metabolism0Least InformativeDirect
UniPathway (UP)nucleotide metabolism0Moderately InformativeDirect
UniPathway (UP)purine metabolism0Moderately InformativeDirect
UniPathway (UP)alcohol metabolism2.001e-11Moderately InformativeDirect
UniPathway (UP)polyol degradation3.114e-15InformativeDirect
UniPathway (UP)ppGpp biosynthesis0Highly InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 24 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a HD-domain/PDEase-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 24 hidden Markov models representing the HD-domain/PDEase-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


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