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Oligoxyloglucan reducing end-specific cellobiohydrolase superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   7-bladed beta-propeller [ 50964] (14)
Superfamily:   Oligoxyloglucan reducing end-specific cellobiohydrolase [ 110296]
Families:   Oligoxyloglucan reducing end-specific cellobiohydrolase [ 110297]


Superfamily statistics
Genomes (1,268) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 3,985 24,429 4
Proteins 3,118 18,748 2


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details) Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular localization 0.0001557 Moderately Informative Direct
Biological Process (BP) organic substance transport 0.0005344 Moderately Informative Direct
Biological Process (BP) macromolecule localization 0.00215 Moderately Informative Inherited
Biological Process (BP) nitrogen compound transport 0.002828 Moderately Informative Inherited
Biological Process (BP) protein transport 0.00000003242 Informative Direct
Biological Process (BP) intracellular transport 0.000007676 Informative Direct
Biological Process (BP) protein localization to organelle 0.1084 Informative Inherited
Biological Process (BP) vesicle-mediated transport 0.003763 Informative Inherited
Biological Process (BP) Golgi vesicle transport 0.00001826 Highly Informative Direct
Biological Process (BP) protein targeting 0.001962 Highly Informative Inherited
Molecular Function (MF) molecular transducer activity 0.003257 Informative Inherited
Molecular Function (MF) signal transducer activity 0.004377 Informative Inherited
Molecular Function (MF) transmembrane signaling receptor activity 0.0001461 Highly Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.9331 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.7888 Least Informative Inherited
Cellular Component (CC) endomembrane system 0.002251 Moderately Informative Inherited
Cellular Component (CC) Golgi apparatus 0.000003325 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processProtein transport0Moderately InformativeDirect
Biological processCarbohydrate metabolism0.001362Moderately InformativeInherited
Biological processEndocytosis0.000000000131InformativeDirect
Biological processPolysaccharide degradation0.000000009986InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentGolgi apparatus0Moderately InformativeDirect
Cellular componentEndosome0.0000009953Moderately InformativeDirect
DomainRepeat0Least InformativeDirect
DomainSignal0Least InformativeDirect
DomainTransmembrane0.0000000000001663Least InformativeDirect
Post-translational modificationHydrolase1Least InformativeInherited
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationGlycosidase0.00002988InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Oligoxyloglucan reducing end-specific cellobiohydrolase domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the Oligoxyloglucan reducing end-specific cellobiohydrolase superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]