SUPERFAMILY 1.75 HMM library and genome assignments server

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Oligoxyloglucan reducing end-specific cellobiohydrolase superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   7-bladed beta-propeller [ 50964] (14)
Superfamily:   Oligoxyloglucan reducing end-specific cellobiohydrolase [ 110296]
Families:   Oligoxyloglucan reducing end-specific cellobiohydrolase [ 110297]

Superfamily statistics
Genomes (1,265) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 3,974 9,552 4
Proteins 3,107 8,019 2

Functional annotation
General category Metabolism
Detailed category Other enzymes

Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular localization 0.0001519 Moderately Informative Direct
Biological Process (BP) organic substance transport 0.0007165 Moderately Informative Direct
Biological Process (BP) nitrogen compound transport 0.003785 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 0.002505 Moderately Informative Inherited
Biological Process (BP) intracellular protein transport 0.000637 Informative Direct
Biological Process (BP) vesicle-mediated transport 0.01673 Informative Inherited
Biological Process (BP) protein localization to organelle 0.1105 Informative Inherited
Biological Process (BP) Golgi vesicle transport 0.00008448 Highly Informative Direct
Molecular Function (MF) molecular transducer activity 0.0027 Informative Inherited
Molecular Function (MF) signal transducer activity 0.003666 Informative Inherited
Molecular Function (MF) transmembrane signaling receptor activity 0.000127 Highly Informative Direct
Cellular Component (CC) cytoplasmic part 0.7806 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.9196 Least Informative Inherited
Cellular Component (CC) Golgi apparatus 0.000002736 Informative Direct

Document: GO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0Least InformativeDirect

Document: MP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)brain0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Glycosylases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processProtein transport0Moderately InformativeDirect
Biological processCarbohydrate metabolism0.001314Moderately InformativeInherited
Biological processEndocytosis0.0000000001332InformativeDirect
Biological processPolysaccharide degradation0.00000000986InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentGolgi apparatus0Moderately InformativeDirect
Cellular componentEndosome0.000000967Moderately InformativeDirect
DomainRepeat0Least InformativeDirect
DomainSignal0Least InformativeDirect
DomainTransmembrane0.0000000000001887Least InformativeDirect
Post-translational modificationHydrolase1Least InformativeInherited
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationGlycosidase0.0000299InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Mouse Phenotype (MP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Browse and view proteins in genomes which have different domain combinations including a Oligoxyloglucan reducing end-specific cellobiohydrolase domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the Oligoxyloglucan reducing end-specific cellobiohydrolase superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Mouse Phenotype (MP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]