SUPERFAMILY 1.75 HMM library and genome assignments server


Oligoxyloglucan reducing end-specific cellobiohydrolase superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   7-bladed beta-propeller [ 50964] (14)
Superfamily:   Oligoxyloglucan reducing end-specific cellobiohydrolase [ 110296]
Families:   Oligoxyloglucan reducing end-specific cellobiohydrolase [ 110297]


Superfamily statistics
Genomes (1,218) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 3,858 5,817 4
Proteins 2,985 4,704 2


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 0.004306 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.06998 Least Informative Inherited
Biological Process (BP) regulation of cellular process 0.8637 Least Informative Inherited
Biological Process (BP) response to stimulus 0.9699 Least Informative Inherited
Biological Process (BP) cellular localization 0.0001066 Moderately Informative Direct
Biological Process (BP) organic substance transport 0.0005902 Moderately Informative Direct
Biological Process (BP) macromolecule localization 0.008649 Moderately Informative Inherited
Biological Process (BP) signal transduction 0.09741 Moderately Informative Inherited
Biological Process (BP) vesicle-mediated transport 0.06931 Informative Inherited
Biological Process (BP) protein transport 0.07359 Informative Inherited
Biological Process (BP) Golgi vesicle transport 4.034e-05 Highly Informative Direct
Biological Process (BP) G-protein coupled receptor signaling pathway 0.001226 Highly Informative Inherited
Molecular Function (MF) receptor activity 0.002386 Informative Inherited
Molecular Function (MF) molecular transducer activity 0.003141 Informative Inherited
Cellular Component (CC) cytoplasmic part 0.4908 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.6157 Least Informative Inherited
Cellular Component (CC) endosome 0.0001379 Informative Direct
Cellular Component (CC) Golgi apparatus 1.006e-06 Informative Direct

Document: GO annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Glycosylases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processProtein transport0Moderately InformativeDirect
Biological processCarbohydrate metabolism0.00105Moderately InformativeInherited
Biological processEndocytosis1.045e-10InformativeDirect
Biological processPolysaccharide degradation3.599e-09InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentGolgi apparatus0Moderately InformativeDirect
Cellular componentEndosome2.99e-07Moderately InformativeDirect
DomainRepeat0Least InformativeDirect
DomainSignal0Least InformativeDirect
DomainTransmembrane1.158e-13Least InformativeDirect
Post-translational modificationHydrolase1Least InformativeInherited
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationGlycosidase4.006e-05InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Yeast Phenotype (YP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Oligoxyloglucan reducing end-specific cellobiohydrolase domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the Oligoxyloglucan reducing end-specific cellobiohydrolase superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Yeast Phenotype (YP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]