SUPERFAMILY 1.75 HMM library and genome assignments server

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YAP1 redox domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   YAP1 redox domain [ 111429]
Superfamily:   YAP1 redox domain [ 111430]
Families:   YAP1 redox domain [ 111431]


Superfamily statistics
Genomes (193) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 296 818 2
Proteins 293 814 2


Functional annotation
General category Metabolism
Detailed category Redox

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) response to stimulus 0 Least Informative Direct
Biological Process (BP) biological regulation 0.0007147 Least Informative Direct
Biological Process (BP) cellular response to chemical stimulus 0 Moderately Informative Direct
Biological Process (BP) cellular response to stress 0 Moderately Informative Direct
Biological Process (BP) regulation of cellular biosynthetic process 0.00000001369 Moderately Informative Direct
Biological Process (BP) regulation of gene expression 0.000001671 Moderately Informative Direct
Biological Process (BP) regulation of macromolecule biosynthetic process 0.08023 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 0.09295 Moderately Informative Inherited
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 0.000000003112 Informative Direct
Biological Process (BP) response to oxidative stress 0.00001653 Informative Direct
Biological Process (BP) regulation of transcription from RNA polymerase II promoter in response to stress 0 Highly Informative Direct
Molecular Function (MF) transcription factor activity, sequence-specific DNA binding 0.00000007656 Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.00004185 Least Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTranscription regulation0Moderately InformativeDirect
Cellular componentNucleus0Least InformativeDirect
Post-translational modificationDNA-binding0Moderately InformativeDirect
Post-translational modificationActivator0.00000000004512Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a YAP1 redox domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the YAP1 redox domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]