SUPERFAMILY 1.75 HMM library and genome assignments server

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YAP1 redox domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   YAP1 redox domain [ 111429]
Superfamily:   YAP1 redox domain [ 111430]
Families:   YAP1 redox domain [ 111431]


Superfamily statistics
Genomes (193) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 296 373 2
Proteins 293 371 2


Functional annotation
General category Metabolism
Detailed category Redox

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) response to stimulus 0.000001941 Least Informative Direct
Biological Process (BP) biological regulation 0.0005454 Least Informative Direct
Biological Process (BP) cellular response to chemical stimulus 0.0000000000178 Moderately Informative Direct
Biological Process (BP) response to stress 0.000000002908 Moderately Informative Direct
Biological Process (BP) regulation of biosynthetic process 0.00000008955 Moderately Informative Direct
Biological Process (BP) regulation of cellular metabolic process 0.0000009361 Moderately Informative Direct
Biological Process (BP) regulation of gene expression 0.000004108 Moderately Informative Direct
Biological Process (BP) regulation of nitrogen compound metabolic process 0.1157 Moderately Informative Inherited
Biological Process (BP) regulation of transcription, DNA-templated 0.0000006898 Informative Direct
Biological Process (BP) response to oxidative stress 0.00001739 Informative Direct
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 0.00000001016 Highly Informative Direct
Molecular Function (MF) transcription factor activity, sequence-specific DNA binding 0.0000001409 Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.0002183 Least Informative Direct

Document: GO annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)metabolism and growth0Least InformativeDirect
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect
Yeast Phenotype (YP)chemical compound accumulation0InformativeDirect

Document: YP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTranscription regulation0Moderately InformativeDirect
Cellular componentNucleus0Least InformativeDirect
Molecular functionDNA-binding0Least InformativeDirect
Post-translational modificationActivator0.0000000000139Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Yeast Phenotype (YP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a YAP1 redox domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the YAP1 redox domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Yeast Phenotype (YP) · UniProtKB KeyWords (KW) · Internal database links ]