SUPERFAMILY 1.75 HMM library and genome assignments server


"Winged helix" DNA-binding domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   DNA/RNA-binding 3-helical bundle [ 46688] (14)
Superfamily:   "Winged helix" DNA-binding domain [ 46785] (84)
Families:   Biotin repressor-like [ 46786] (2)
  LexA repressor, N-terminal DNA-binding domain [ 46789]
  Arginine repressor (ArgR), N-terminal DNA-binding domain [ 46792]
  Transcriptional repressor Rex, N-terminal domain [ 101007]
  CAP C-terminal domain-like [ 46796] (8)
  Lrp/AsnC-like transcriptional regulator N-terminal domain [ 68967] (4)
  ArsR-like transcriptional regulators [ 46801] (4)
  Transcriptional regulator IclR, N-terminal domain [ 74676]
  MarR-like transcriptional regulators [ 63379] (19)
  DNA-binding protein Mj223 [ 81690]
  Penicillinase repressor [ 101016] (3)
  GntR-like transcriptional regulators [ 46804] (4)
  N-terminal domain of Bacillus PurR [ 101021]
  Replication terminator protein (RTP) [ 46807]
  LysR-like transcriptional regulators [ 88979] (2)
  N-terminal domain of molybdate-dependent transcriptional regulator ModE [ 46810]
  Transcription factor MotA, activation domain [ 46813]
  Transcription factor E/IIe-alpha, N-terminal domain [ 101024]
  FUR-like [ 101027]
  Replication initiation protein [ 46816] (3)
  Helicase DNA-binding domain [ 46819] (4)
  RecQ helicase DNA-binding domain-like [ 101030] (3)
  SCF ubiquitin ligase complex WHB domain [ 74679] (3)
  C-terminal fragment of elongation factor SelB [ 74683]
  Restriction endonuclease FokI, N-terminal (recognition) domain [ 46824]
  TnsA endonuclease, C-terminal domain [ 46782]
  Plant O-methyltransferase, N-terminal domain [ 63475] (5)
  Linker histone H1/H5 [ 46827] (3)
  Forkhead DNA-binding domain [ 46832] (6)
  DNA-binding domain from rap30 [ 46841]
  C-terminal domain of the rap74 subunit of TFIIF [ 63480]
  C-terminal domain of RPA32 [ 46844]
  DEP domain [ 63483] (4)
  Cell cycle transcription factor e2f-dp [ 46847] (2)
  The central core domain of TFIIE beta [ 46850]
  Z-DNA binding domain [ 46853] (4)
  P4 origin-binding domain-like [ 46856] (2)
  ets domain [ 46859] (8)
  Heat-shock transcription factor [ 46873]
  Interferon regulatory factor [ 46877] (3)
  39 kda initiator binding protein, IBP39, N-terminal domain [ 101045]
  Iron-dependent repressor protein [ 46882] (3)
  Dissimilatory sulfite reductase DsvD [ 101048]
  La domain [ 101051] (2)
  Methionine aminopeptidase, insert domain [ 46887]
  PCI domain (PINT motif) [ 109671] (2)
  F93-like [ 109674] (3)
  Archaeal DNA-binding protein [ 109677]
  TrmB-like [ 109680] (2)
  Heat-inducible transcription repressor HrcA, N-terminal domain [ 109683]
  DNA replication factor Cdt1 [ 109686]
  Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain [ 109689]
  Vacuolar sorting protein domain [ 109692] (3)
  Transcriptional regulator Rrf2 [ 109699] (2)
  Rio2 serine protein kinase N-terminal domain [ 109702]
  Rad21/Rec8-like [ 116795]
  Hypothetical protein PH1932 [ 116798]
  An Obfc1 domain [ 116801]
  ScpB/YpuH-like [ 116804]
  PadR-like [ 116807] (3)
  Hypothetical protein YhgG [ 116812]
  ROK associated domain [ 140279] (3)
  PF1790-like [ 140286]
  MukF N-terminal domain-like [ 140289]
  CodY HTH domain [ 140292]
  FtsK C-terminal domain-like [ 140295]
  Nudix-associated domain [ 140299] (2)
  HxlR-like [ 140304] (5)
  Marine metagenome family WH1 [ 158296]
  ReutB4095-like [ 158299]
  PH0730 N-terminal domain-like [ 158302]
  FaeA-like [ 158305]
  STY4665 C-terminal domain-like [ 158308]
  PSPTO2686-like [ 158311]
  RHA1 ro06458-like [ 158314]
  YjcQ-like [ 158317]
  F112-like [ 158320]
  MerB N-terminal domain-like [ 158323]
  CED-4 C-terminal domain-like [ 158326]
  ELL N2 domain-like [ 158329]
  PF0610-like [ 158332]
  Rv2827c N-terminal domain-like [ 158335]
  Rps19E-like [ 158338]
  RPO3F domain-like [ 158341]


Superfamily statistics
Genomes (3,219) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 269,148 1,500,942 304
Proteins 261,224 1,452,634 284


Functional annotation
General category Regulation
Detailed category DNA-binding

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)regulation of metabolic process2.08e-090Least InformativeDirect
Biological Process (BP)developmental process0.48290Least InformativeInherited
Biological Process (BP)multicellular organismal process0.60451.083e-14Least InformativeInherited
Biological Process (BP)single-organism cellular process10.0003093Least InformativeInherited
Biological Process (BP)regulation of cellular process0.0090971.931e-15Least InformativeInherited
Biological Process (BP)regulation of gene expression00Moderately InformativeDirect
Biological Process (BP)regulation of cellular biosynthetic process3.381e-070Moderately InformativeDirect
Biological Process (BP)regulation of macromolecule biosynthetic process4.751e-070Moderately InformativeDirect
Biological Process (BP)regulation of nucleobase-containing compound metabolic process1.135e-060Moderately InformativeDirect
Biological Process (BP)immune system process0.48417.291e-05Moderately InformativeInherited
Biological Process (BP)single-organism developmental process0.073940Moderately InformativeInherited
Biological Process (BP)cell differentiation0.13180.03818Moderately InformativeInherited
Biological Process (BP)organ development0.39012.246e-06Moderately InformativeInherited
Biological Process (BP)regulation of multicellular organismal process0.95221Moderately InformativeInherited
Biological Process (BP)positive regulation of metabolic process0.73592.983e-06Moderately InformativeInherited
Biological Process (BP)positive regulation of cellular process10.129Moderately InformativeInherited
Biological Process (BP)regulation of protein metabolic process11Moderately InformativeInherited
Biological Process (BP)leukocyte activation0.030970.07115InformativeInherited
Biological Process (BP)hematopoietic or lymphoid organ development0.002060.0001318InformativeInherited
Biological Process (BP)regulation of cytokine production0.049451.515e-05InformativeInherited
Biological Process (BP)positive regulation of macromolecule biosynthetic process10.0003488InformativeInherited
Biological Process (BP)positive regulation of cellular biosynthetic process10.006624InformativeInherited
Biological Process (BP)alpha-beta T cell activation8.403e-055.146e-05Highly InformativeDirect
Biological Process (BP)T cell differentiation0.00090580.8414Highly InformativeInherited
Biological Process (BP)regulation of cytokine biosynthetic process0.02890.02055Highly InformativeInherited
Molecular Function (MF)binding0.76080Least InformativeInherited
Molecular Function (MF)nucleic acid binding00Moderately InformativeDirect
Molecular Function (MF)nucleic acid binding transcription factor activity00InformativeDirect
Molecular Function (MF)DNA binding2.128e-080InformativeDirect
Molecular Function (MF)transcription regulatory region DNA binding2.258e-100Highly InformativeDirect
Cellular Component (CC)intracellular non-membrane-bounded organelle0.010470.326Least InformativeInherited
Cellular Component (CC)intracellular organelle part0.68290.3535Least InformativeInherited
Cellular Component (CC)cytoplasmic part11Least InformativeInherited
Cellular Component (CC)cytosol0.24350.2884Moderately InformativeInherited
Cellular Component (CC)ribonucleoprotein complex5.121e-071Moderately InformativeInherited
Cellular Component (CC)small ribosomal subunit4.305e-130.0004063InformativeDirect
Cellular Component (CC)cytosolic ribosome0.010140.05432InformativeInherited
Cellular Component (CC)cytosolic small ribosomal subunit1.375e-143.364e-06Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) regulation of metabolic process 0 Least Informative Direct
Biological Process (BP) regulation of cellular process 1.931e-15 Least Informative Direct
Biological Process (BP) developmental process 0 Least Informative Direct
Biological Process (BP) multicellular organismal process 1.083e-14 Least Informative Direct
Biological Process (BP) biosynthetic process 7.806e-07 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 1.094e-11 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 8.25e-11 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 3.745e-08 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 6.283e-05 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.0003093 Least Informative Direct
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.02019 Least Informative Inherited
Biological Process (BP) localization 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.7733 Least Informative Inherited
Biological Process (BP) response to stimulus 0.3561 Least Informative Inherited
Biological Process (BP) regulation of gene expression 0 Moderately Informative Direct
Biological Process (BP) regulation of cellular biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) regulation of macromolecule biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) gene expression 8.235e-13 Moderately Informative Direct
Biological Process (BP) single-organism developmental process 0 Moderately Informative Direct
Biological Process (BP) organ development 2.246e-06 Moderately Informative Direct
Biological Process (BP) immune system process 7.291e-05 Moderately Informative Direct
Biological Process (BP) cellular nitrogen compound biosynthetic process 1.429e-14 Moderately Informative Direct
Biological Process (BP) positive regulation of metabolic process 2.983e-06 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 1.836e-13 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 2.617e-14 Moderately Informative Direct
Biological Process (BP) tissue development 1.41e-05 Moderately Informative Direct
Biological Process (BP) cellular response to stress 2.547e-05 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 2.755e-11 Moderately Informative Direct
Biological Process (BP) regulation of developmental process 0.9035 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 1 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 0.877 Moderately Informative Inherited
Biological Process (BP) signal transduction 1 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 0.4357 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 0.6517 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 0.03818 Moderately Informative Inherited
Biological Process (BP) positive regulation of response to stimulus 1 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 0.02194 Moderately Informative Inherited
Biological Process (BP) reproduction 0.2044 Moderately Informative Inherited
Biological Process (BP) regulation of signal transduction 0.3539 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 0.129 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 1 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 0.02252 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 0.4405 Moderately Informative Inherited
Biological Process (BP) macromolecular complex subunit organization 0.4274 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of molecular function 0.00788 Moderately Informative Inherited
Biological Process (BP) regulation of catalytic activity 1 Moderately Informative Inherited
Biological Process (BP) multi-organism process 1 Moderately Informative Inherited
Biological Process (BP) response to organic substance 1 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.5277 Moderately Informative Inherited
Biological Process (BP) regulation of phosphate metabolic process 0.6813 Moderately Informative Inherited
Biological Process (BP) organonitrogen compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) nervous system development 1 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 1 Moderately Informative Inherited
Biological Process (BP) RNA metabolic process 0.001755 Moderately Informative Inherited
Biological Process (BP) system process 1 Moderately Informative Inherited
Biological Process (BP) cellular localization 1 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound catabolic process 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.05507 Moderately Informative Inherited
Biological Process (BP) regulation of biological quality 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.0365 Moderately Informative Inherited
Biological Process (BP) hematopoietic or lymphoid organ development 0.0001318 Informative Direct
Biological Process (BP) anatomical structure formation involved in morphogenesis 3.006e-05 Informative Direct
Biological Process (BP) regulation of cytokine production 1.515e-05 Informative Direct
Biological Process (BP) cardiovascular system development 0.0002046 Informative Direct
Biological Process (BP) response to DNA damage stimulus 1.065e-09 Informative Direct
Biological Process (BP) positive regulation of gene expression 2.409e-06 Informative Direct
Biological Process (BP) chromosome organization 0 Informative Direct
Biological Process (BP) protein catabolic process 0 Informative Direct
Biological Process (BP) cell cycle process 0 Informative Direct
Biological Process (BP) transcription, DNA-dependent 0 Informative Direct
Biological Process (BP) cellular macromolecule catabolic process 2.622e-13 Informative Direct
Biological Process (BP) proteolysis 1.769e-12 Informative Direct
Biological Process (BP) positive regulation of hydrolase activity 4.962e-09 Informative Direct
Biological Process (BP) DNA metabolic process 1.019e-07 Informative Direct
Biological Process (BP) protein modification by small protein conjugation or removal 8.907e-07 Informative Direct
Biological Process (BP) embryonic organ development 2.247e-05 Informative Direct
Biological Process (BP) regulation of purine nucleotide metabolic process 0.0002399 Informative Direct
Biological Process (BP) multicellular organismal reproductive process 0.0002832 Informative Direct
Biological Process (BP) positive regulation of macromolecule biosynthetic process 0.0003488 Informative Direct
Biological Process (BP) positive regulation of developmental process 1 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 1 Informative Inherited
Biological Process (BP) regulation of cellular component biogenesis 1 Informative Inherited
Biological Process (BP) regulation of nervous system development 1 Informative Inherited
Biological Process (BP) cytoplasmic transport 0.8717 Informative Inherited
Biological Process (BP) organ morphogenesis 1 Informative Inherited
Biological Process (BP) intracellular signal transduction 0.3496 Informative Inherited
Biological Process (BP) negative regulation of gene expression 0.5758 Informative Inherited
Biological Process (BP) mitotic cell cycle 0.162 Informative Inherited
Biological Process (BP) response to inorganic substance 0.3336 Informative Inherited
Biological Process (BP) response to oxidative stress 0.5229 Informative Inherited
Biological Process (BP) cellular response to nitrogen compound 0.0214 Informative Inherited
Biological Process (BP) cellular response to oxygen-containing compound 0.2137 Informative Inherited
Biological Process (BP) response to cytokine stimulus 0.7603 Informative Inherited
Biological Process (BP) immune response 0.465 Informative Inherited
Biological Process (BP) defense response 1 Informative Inherited
Biological Process (BP) protein localization to organelle 0.4566 Informative Inherited
Biological Process (BP) protein oligomerization 1 Informative Inherited
Biological Process (BP) embryo development ending in birth or egg hatching 0.3663 Informative Inherited
Biological Process (BP) gland development 0.3435 Informative Inherited
Biological Process (BP) tube development 0.1035 Informative Inherited
Biological Process (BP) regulation of immune response 0.9673 Informative Inherited
Biological Process (BP) positive regulation of signal transduction 1 Informative Inherited
Biological Process (BP) regulation of defense response 1 Informative Inherited
Biological Process (BP) positive regulation of cellular component organization 1 Informative Inherited
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 1 Informative Inherited
Biological Process (BP) immune effector process 0.9237 Informative Inherited
Biological Process (BP) regulation of growth 0.9491 Informative Inherited
Biological Process (BP) positive regulation of protein modification process 1 Informative Inherited
Biological Process (BP) positive regulation of nitrogen compound metabolic process 0.004457 Informative Inherited
Biological Process (BP) organelle localization 1 Informative Inherited
Biological Process (BP) generation of neurons 0.9886 Informative Inherited
Biological Process (BP) negative regulation of protein metabolic process 1 Informative Inherited
Biological Process (BP) positive regulation of cellular biosynthetic process 0.006624 Informative Inherited
Biological Process (BP) regulation of mitotic cell cycle 0.288 Informative Inherited
Biological Process (BP) cellular macromolecular complex assembly 0.582 Informative Inherited
Biological Process (BP) response to organonitrogen compound 0.4029 Informative Inherited
Biological Process (BP) actin filament-based process 1 Informative Inherited
Biological Process (BP) cytoskeleton organization 1 Informative Inherited
Biological Process (BP) response to other organism 0.3367 Informative Inherited
Biological Process (BP) developmental process involved in reproduction 1 Informative Inherited
Biological Process (BP) regulation of cellular catabolic process 1 Informative Inherited
Biological Process (BP) regulation of nucleoside metabolic process 1 Informative Inherited
Biological Process (BP) positive regulation of multicellular organismal process 1 Informative Inherited
Biological Process (BP) negative regulation of signaling 1 Informative Inherited
Biological Process (BP) negative regulation of cell communication 1 Informative Inherited
Biological Process (BP) regulation of cell cycle process 0.2582 Informative Inherited
Biological Process (BP) negative regulation of developmental process 0.06449 Informative Inherited
Biological Process (BP) amide biosynthetic process 0.5864 Informative Inherited
Biological Process (BP) regulation of hormone levels 0.5496 Informative Inherited
Biological Process (BP) localization of cell 0.2233 Informative Inherited
Biological Process (BP) locomotion 0.8669 Informative Inherited
Biological Process (BP) cellular component movement 1 Informative Inherited
Biological Process (BP) central nervous system development 1 Informative Inherited
Biological Process (BP) peptidyl-amino acid modification 1 Informative Inherited
Biological Process (BP) RNA modification 1 Informative Inherited
Biological Process (BP) response to light stimulus 0.8587 Informative Inherited
Biological Process (BP) secondary metabolic process 0.02525 Informative Inherited
Biological Process (BP) cellular response to endogenous stimulus 0.881 Informative Inherited
Biological Process (BP) response to hormone stimulus 0.9175 Informative Inherited
Biological Process (BP) enzyme linked receptor protein signaling pathway 1 Informative Inherited
Biological Process (BP) single-organism behavior 0.5485 Informative Inherited
Biological Process (BP) cellular component morphogenesis 0.8508 Informative Inherited
Biological Process (BP) cell projection organization 0.8009 Informative Inherited
Biological Process (BP) single organism reproductive process 0.02177 Informative Inherited
Biological Process (BP) sexual reproduction 0.06381 Informative Inherited
Biological Process (BP) cellular process involved in reproduction 0.08523 Informative Inherited
Biological Process (BP) vesicle-mediated transport 1 Informative Inherited
Biological Process (BP) cellular membrane organization 1 Informative Inherited
Biological Process (BP) apoptotic process 0.7529 Informative Inherited
Biological Process (BP) nucleobase-containing compound catabolic process 1 Informative Inherited
Biological Process (BP) nucleic acid phosphodiester bond hydrolysis 1 Informative Inherited
Biological Process (BP) microtubule-based process 0.8456 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 1 Informative Inherited
Biological Process (BP) positive regulation of immune system process 1 Informative Inherited
Biological Process (BP) regulation of immune effector process 0.2801 Informative Inherited
Biological Process (BP) leukocyte activation 0.07115 Informative Inherited
Biological Process (BP) sensory organ development 0.6765 Informative Inherited
Biological Process (BP) muscle tissue development 0.4928 Informative Inherited
Biological Process (BP) muscle structure development 0.5336 Informative Inherited
Biological Process (BP) epithelium development 0.04452 Informative Inherited
Biological Process (BP) embryonic morphogenesis 0.00991 Informative Inherited
Biological Process (BP) tissue morphogenesis 0.2535 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 0.768 Informative Inherited
Biological Process (BP) negative regulation of nitrogen compound metabolic process 0.2108 Informative Inherited
Biological Process (BP) response to nutrient levels 0.9415 Informative Inherited
Biological Process (BP) alpha-beta T cell activation 5.146e-05 Highly Informative Direct
Biological Process (BP) pattern specification process 1.076e-05 Highly Informative Direct
Biological Process (BP) translational initiation 0 Highly Informative Direct
Biological Process (BP) ubiquitin-dependent protein catabolic process 0 Highly Informative Direct
Biological Process (BP) carbohydrate homeostasis 1.392e-09 Highly Informative Direct
Biological Process (BP) cell cycle phase 2.006e-09 Highly Informative Direct
Biological Process (BP) negative regulation of sequence-specific DNA binding transcription factor activity 1.128e-06 Highly Informative Direct
Biological Process (BP) response to heat 2.629e-06 Highly Informative Direct
Biological Process (BP) protein ubiquitination 1.209e-05 Highly Informative Direct
Biological Process (BP) mitotic cell cycle phase transition 4.191e-05 Highly Informative Direct
Biological Process (BP) regulation of cell division 6.357e-05 Highly Informative Direct
Biological Process (BP) toxin metabolic process 0.0001797 Highly Informative Direct
Biological Process (BP) response to virus 0.0001889 Highly Informative Direct
Biological Process (BP) regulation of production of molecular mediator of immune response 0.0001936 Highly Informative Direct
Biological Process (BP) endocrine system development 0.0002722 Highly Informative Direct
Biological Process (BP) regulation of G-protein coupled receptor protein signaling pathway 0.0003018 Highly Informative Direct
Biological Process (BP) positive regulation of cell cycle process 0.0003152 Highly Informative Direct
Biological Process (BP) regulation of DNA metabolic process 0.0004079 Highly Informative Direct
Biological Process (BP) neural tube development 0.000633 Highly Informative Direct
Biological Process (BP) double-strand break repair 0.0008427 Highly Informative Direct
Biological Process (BP) regulation of striated muscle tissue development 0.1242 Highly Informative Inherited
Biological Process (BP) regulation of cellular response to stress 1 Highly Informative Inherited
Biological Process (BP) regulation of organ morphogenesis 0.00112 Highly Informative Inherited
Biological Process (BP) embryonic organ morphogenesis 0.0906 Highly Informative Inherited
Biological Process (BP) ear development 1 Highly Informative Inherited
Biological Process (BP) negative regulation of transcription, DNA-dependent 0.8142 Highly Informative Inherited
Biological Process (BP) cellular response to reactive oxygen species 0.7589 Highly Informative Inherited
Biological Process (BP) muscle fiber development 0.646 Highly Informative Inherited
Biological Process (BP) protein homooligomerization 0.8006 Highly Informative Inherited
Biological Process (BP) diencephalon development 0.1024 Highly Informative Inherited
Biological Process (BP) establishment or maintenance of cell polarity 0.2256 Highly Informative Inherited
Biological Process (BP) respiratory system development 0.2543 Highly Informative Inherited
Biological Process (BP) respiratory tube development 0.00945 Highly Informative Inherited
Biological Process (BP) placenta development 0.005447 Highly Informative Inherited
Biological Process (BP) mammary gland epithelium development 0.005544 Highly Informative Inherited
Biological Process (BP) regulation of innate immune response 0.01535 Highly Informative Inherited
Biological Process (BP) cytokine-mediated signaling pathway 0.5135 Highly Informative Inherited
Biological Process (BP) regulation of protein complex assembly 0.01438 Highly Informative Inherited
Biological Process (BP) positive regulation of transcription, DNA-dependent 0.1161 Highly Informative Inherited
Biological Process (BP) regulation of developmental growth 0.8646 Highly Informative Inherited
Biological Process (BP) regulation of ligase activity 0.1101 Highly Informative Inherited
Biological Process (BP) regulation of protein ubiquitination 0.6738 Highly Informative Inherited
Biological Process (BP) negative regulation of cell activation 0.1637 Highly Informative Inherited
Biological Process (BP) cell fate commitment 0.02605 Highly Informative Inherited
Biological Process (BP) Golgi vesicle transport 0.3641 Highly Informative Inherited
Biological Process (BP) T cell differentiation 0.8414 Highly Informative Inherited
Biological Process (BP) regulation of cellular response to insulin stimulus 0.001866 Highly Informative Inherited
Biological Process (BP) positive regulation of catabolic process 1 Highly Informative Inherited
Biological Process (BP) regulation of protein catabolic process 0.1992 Highly Informative Inherited
Biological Process (BP) regulation of T cell activation 0.02131 Highly Informative Inherited
Biological Process (BP) regulation of cytokine biosynthetic process 0.02055 Highly Informative Inherited
Biological Process (BP) DNA replication 0.2988 Highly Informative Inherited
Biological Process (BP) DNA damage checkpoint 0.01355 Highly Informative Inherited
Biological Process (BP) negative regulation of mitotic cell cycle phase transition 1 Highly Informative Inherited
Biological Process (BP) regulation of multi-organism process 0.2263 Highly Informative Inherited
Biological Process (BP) response to amino acid stimulus 0.1995 Highly Informative Inherited
Biological Process (BP) actin filament organization 1 Highly Informative Inherited
Biological Process (BP) transcription from RNA polymerase II promoter 0.52 Highly Informative Inherited
Biological Process (BP) cell division 0.5407 Highly Informative Inherited
Biological Process (BP) innate immune response 0.461 Highly Informative Inherited
Biological Process (BP) regulation of toll-like receptor signaling pathway 0.001172 Highly Informative Inherited
Biological Process (BP) DNA recombination 0.07368 Highly Informative Inherited
Biological Process (BP) positive regulation of cytokine production 0.00465 Highly Informative Inherited
Biological Process (BP) negative regulation of multicellular organismal process 1 Highly Informative Inherited
Biological Process (BP) negative regulation of cell differentiation 0.005092 Highly Informative Inherited
Biological Process (BP) regulation of epithelial cell differentiation 0.001946 Highly Informative Inherited
Biological Process (BP) regulation of myeloid cell differentiation 0.02304 Highly Informative Inherited
Biological Process (BP) regulation of leukocyte differentiation 0.1178 Highly Informative Inherited
Biological Process (BP) indole-containing compound biosynthetic process 0.1502 Highly Informative Inherited
Biological Process (BP) hormone biosynthetic process 0.5469 Highly Informative Inherited
Biological Process (BP) cellular hormone metabolic process 0.3948 Highly Informative Inherited
Biological Process (BP) ovulation cycle process 0.008024 Highly Informative Inherited
Biological Process (BP) telencephalon development 0.02563 Highly Informative Inherited
Biological Process (BP) peptidyl-lysine modification 0.007858 Highly Informative Inherited
Biological Process (BP) histone modification 0.0321 Highly Informative Inherited
Biological Process (BP) internal protein amino acid acetylation 1 Highly Informative Inherited
Biological Process (BP) regulation of autophagy 0.2388 Highly Informative Inherited
Biological Process (BP) epidermal cell differentiation 1 Highly Informative Inherited
Biological Process (BP) post-embryonic development 1 Highly Informative Inherited
Biological Process (BP) learning or memory 0.6412 Highly Informative Inherited
Biological Process (BP) cellular response to peptide 0.04398 Highly Informative Inherited
Biological Process (BP) response to peptide hormone stimulus 0.1417 Highly Informative Inherited
Biological Process (BP) transmembrane receptor protein tyrosine kinase signaling pathway 0.9635 Highly Informative Inherited
Biological Process (BP) cell morphogenesis involved in differentiation 0.4708 Highly Informative Inherited
Biological Process (BP) cell part morphogenesis 0.3152 Highly Informative Inherited
Biological Process (BP) neuron projection development 0.4061 Highly Informative Inherited
Biological Process (BP) cellular component assembly involved in morphogenesis 0.04698 Highly Informative Inherited
Biological Process (BP) cellular process involved in reproduction in multicellular organism 1 Highly Informative Inherited
Biological Process (BP) female gamete generation 1 Highly Informative Inherited
Biological Process (BP) execution phase of apoptosis 0.006187 Highly Informative Inherited
Biological Process (BP) vesicle organization 0.1141 Highly Informative Inherited
Biological Process (BP) cellular component disassembly 0.5983 Highly Informative Inherited
Biological Process (BP) DNA catabolic process 0.2824 Highly Informative Inherited
Biological Process (BP) DNA modification 0.6053 Highly Informative Inherited
Biological Process (BP) microtubule-based movement 0.7719 Highly Informative Inherited
Biological Process (BP) negative regulation of immune system process 0.3713 Highly Informative Inherited
Biological Process (BP) regulation of adaptive immune response based on somatic recombination of immune receptors built from 1 Highly Informative Inherited
Biological Process (BP) regulation of lymphocyte mediated immunity 0.3612 Highly Informative Inherited
Biological Process (BP) B cell activation 0.9998 Highly Informative Inherited
Biological Process (BP) muscle organ development 0.05638 Highly Informative Inherited
Biological Process (BP) morphogenesis of embryonic epithelium 1 Highly Informative Inherited
Molecular Function (MF) binding 0 Least Informative Direct
Molecular Function (MF) hydrolase activity 1 Least Informative Inherited
Molecular Function (MF) transferase activity 1 Least Informative Inherited
Molecular Function (MF) nucleic acid binding 0 Moderately Informative Direct
Molecular Function (MF) enzyme regulator activity 0.04542 Moderately Informative Inherited
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1 Moderately Informative Inherited
Molecular Function (MF) nucleic acid binding transcription factor activity 0 Informative Direct
Molecular Function (MF) DNA binding 0 Informative Direct
Molecular Function (MF) GTPase regulator activity 5.19e-09 Informative Direct
Molecular Function (MF) chromatin binding 5.053e-07 Informative Direct
Molecular Function (MF) transferase activity, transferring one-carbon groups 0.0001788 Informative Direct
Molecular Function (MF) enzyme binding 1 Informative Inherited
Molecular Function (MF) nucleotide binding 1 Informative Inherited
Molecular Function (MF) enzyme activator activity 0.04849 Informative Inherited
Molecular Function (MF) transferase activity, transferring acyl groups 1 Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 1 Informative Inherited
Molecular Function (MF) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1 Informative Inherited
Molecular Function (MF) RNA binding 1 Informative Inherited
Molecular Function (MF) transcription regulatory region DNA binding 0 Highly Informative Direct
Molecular Function (MF) translation factor activity, nucleic acid binding 4.773e-11 Highly Informative Direct
Molecular Function (MF) transcription factor binding 6.338e-08 Highly Informative Direct
Molecular Function (MF) protein binding transcription factor activity 2.646e-05 Highly Informative Direct
Molecular Function (MF) methyltransferase activity 3.453e-05 Highly Informative Direct
Molecular Function (MF) GTPase activator activity 0.0004793 Highly Informative Direct
Molecular Function (MF) protein phosphatase binding 0.2423 Highly Informative Inherited
Molecular Function (MF) structure-specific DNA binding 0.9795 Highly Informative Inherited
Molecular Function (MF) acetyltransferase activity 0.09816 Highly Informative Inherited
Molecular Function (MF) deaminase activity 0.01984 Highly Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.3535 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.326 Least Informative Inherited
Cellular Component (CC) protein complex 0.05505 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) membrane 1 Least Informative Inherited
Cellular Component (CC) intracellular organelle lumen 0 Moderately Informative Direct
Cellular Component (CC) nuclear part 2.259e-12 Moderately Informative Direct
Cellular Component (CC) cell projection 1 Moderately Informative Inherited
Cellular Component (CC) cytosol 0.2884 Moderately Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 1 Moderately Informative Inherited
Cellular Component (CC) cytoskeleton 1 Moderately Informative Inherited
Cellular Component (CC) organelle membrane 1 Moderately Informative Inherited
Cellular Component (CC) small ribosomal subunit 0.0004063 Informative Direct
Cellular Component (CC) chromosome 0 Informative Direct
Cellular Component (CC) ubiquitin ligase complex 2.645e-13 Informative Direct
Cellular Component (CC) neuron projection 1 Informative Inherited
Cellular Component (CC) cytosolic ribosome 0.05432 Informative Inherited
Cellular Component (CC) nucleoplasm part 1 Informative Inherited
Cellular Component (CC) endosome 1 Informative Inherited
Cellular Component (CC) microtubule cytoskeleton 1 Informative Inherited
Cellular Component (CC) nuclear DNA-directed RNA polymerase complex 0.7928 Informative Inherited
Cellular Component (CC) cytosolic small ribosomal subunit 3.364e-06 Highly Informative Direct
Cellular Component (CC) nuclear chromosome part 9.931e-05 Highly Informative Direct
Cellular Component (CC) dendrite 1 Highly Informative Inherited
Cellular Component (CC) nuclear body 1 Highly Informative Inherited
Cellular Component (CC) endosomal part 0.001531 Highly Informative Inherited
Cellular Component (CC) spindle 1 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Least InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0Least InformativeDirect
Enzyme Commission (EC)Ligases1Least InformativeInherited
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Transferring one-carbon groups1Least InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides; involved in cellular an0Moderately InformativeDirect
Enzyme Commission (EC)Serine endopeptidases0Moderately InformativeDirect
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compoun1Moderately InformativeInherited
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep1Moderately InformativeInherited
Enzyme Commission (EC)Transferring groups other than amino-acyl groups1Moderately InformativeInherited
Enzyme Commission (EC)Methyltransferases0.6492Moderately InformativeInherited
Enzyme Commission (EC)Phenylalanine--tRNA ligase8.665e-07InformativeDirect
Enzyme Commission (EC)Histone acetyltransferase9.867e-05InformativeDirect
Enzyme Commission (EC)Aminopeptidases0.0003545InformativeDirect
Enzyme Commission (EC)Sole sub-subclass for lyases that do not belong in1InformativeInherited

Document: EC annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)mortality/aging4.749e-05Least InformativeDirect
Mammalian Phenotype (MP)cardiovascular system phenotype0.01363Least InformativeInherited
Mammalian Phenotype (MP)abnormal cardiovascular development0.0001623Moderately InformativeDirect
Mammalian Phenotype (MP)digestive/alimentary phenotype0.02894Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal eye morphology0.3374Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal heart morphology0.6467Moderately InformativeInherited
Mammalian Phenotype (MP)muscle phenotype0.656Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal tumor incidence0.7929Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal anterior eye segment morphology0.4114InformativeInherited
Mammalian Phenotype (MP)abnormal uvea morphology0.4124InformativeInherited
Mammalian Phenotype (MP)abnormal heart layer morphology0.8299InformativeInherited
Mammalian Phenotype (MP)abnormal trabecular meshwork morphology0.0002746Highly InformativeDirect
Mammalian Phenotype (MP)abnormal esophagus morphology0.08207Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell physiology variant2.805e-10Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant1.358e-07Least InformativeDirect
Worm Phenotype (WP)organism environmental stimulus response variant0.01508Least InformativeInherited
Worm Phenotype (WP)organ system development variant4.145e-08Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal2.46e-05Moderately InformativeDirect
Worm Phenotype (WP)protein aggregation variant0.0001682Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0.008315Moderately InformativeInherited
Worm Phenotype (WP)gametogenesis variant0.2971Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.5767Moderately InformativeInherited
Worm Phenotype (WP)cell organization biogenesis variant0.797Moderately InformativeInherited
Worm Phenotype (WP)life span variant1.065e-06InformativeDirect
Worm Phenotype (WP)organism stress response variant0.00195InformativeInherited
Worm Phenotype (WP)embryonic cell organization biogenesis variant0.002108InformativeInherited
Worm Phenotype (WP)pigmentation variant0.007602InformativeInherited
Worm Phenotype (WP)vulva development variant0.3565InformativeInherited
Worm Phenotype (WP)chromosome segregation variant0.4178InformativeInherited
Worm Phenotype (WP)cell stress response variant0.584InformativeInherited
Worm Phenotype (WP)VPC competence variant0.67InformativeInherited
Worm Phenotype (WP)protein expression variant0.9107InformativeInherited
Worm Phenotype (WP)meiotic chromosome organization variant0.931InformativeInherited
Worm Phenotype (WP)rachis morphology variant1InformativeInherited
Worm Phenotype (WP)spontaneous mutation rate increased1.877e-05Highly InformativeDirect
Worm Phenotype (WP)mitotic spindle defective early emb0.0001799Highly InformativeDirect
Worm Phenotype (WP)aneuploidy0.00383Highly InformativeInherited
Worm Phenotype (WP)meiotic chromosome segregation variant0.009616Highly InformativeInherited
Worm Phenotype (WP)oxidative stress response variant0.04868Highly InformativeInherited
Worm Phenotype (WP)organism oxidative stress response variant0.08411Highly InformativeInherited
Worm Phenotype (WP)pesticide response variant0.09221Highly InformativeInherited
Worm Phenotype (WP)transgene silencing variant0.1647Highly InformativeInherited
Worm Phenotype (WP)nervous system development variant0.166Highly InformativeInherited
Worm Phenotype (WP)organism osmotic stress response variant0.1707Highly InformativeInherited
Worm Phenotype (WP)level of protein expression variant0.3561Highly InformativeInherited
Worm Phenotype (WP)stress induced lethality increased0.9206Highly InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)cell cycle progression0.0001756InformativeDirect

Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)increased mortality0.001456Least InformativeInherited

Document: FP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo4.368e-06Least InformativeDirect
Xenopus ANatomical entity (XAN)portion of tissue0.0007389Least InformativeDirect
Xenopus ANatomical entity (XAN)cell0.08171Least InformativeInherited
Xenopus ANatomical entity (XAN)head0.8635Least InformativeInherited
Xenopus ANatomical entity (XAN)central nervous system1Least InformativeInherited
Xenopus ANatomical entity (XAN)embryonic structure1.239e-08Moderately InformativeDirect
Xenopus ANatomical entity (XAN)multi-tissue structure9.021e-05Moderately InformativeDirect
Xenopus ANatomical entity (XAN)ectoderm0.0006612Moderately InformativeDirect
Xenopus ANatomical entity (XAN)surface structure0.6734Moderately InformativeInherited
Xenopus ANatomical entity (XAN)pharyngeal region2.563e-09InformativeDirect
Xenopus ANatomical entity (XAN)anatomical direction1.246e-08InformativeDirect
Xenopus ANatomical entity (XAN)pre-chordal neural plate7.836e-07InformativeDirect
Xenopus ANatomical entity (XAN)vestibuloauditory system0.0002578InformativeDirect
Xenopus ANatomical entity (XAN)spinal cord0.0004394InformativeDirect
Xenopus ANatomical entity (XAN)hematological system0.0004409InformativeDirect
Xenopus ANatomical entity (XAN)hindbrain0.0006008InformativeDirect
Xenopus ANatomical entity (XAN)mesoderm0.0192InformativeInherited
Xenopus ANatomical entity (XAN)tail0.8059InformativeInherited
Xenopus ANatomical entity (XAN)intersomitic region1.051e-05Highly InformativeDirect
Xenopus ANatomical entity (XAN)optic field1.369e-05Highly InformativeDirect
Xenopus ANatomical entity (XAN)cranial neural crest5.659e-05Highly InformativeDirect
Xenopus ANatomical entity (XAN)floor plate5.711e-05Highly InformativeDirect
Xenopus ANatomical entity (XAN)epithelium0.0001545Highly InformativeDirect
Xenopus ANatomical entity (XAN)neural fold0.0009477Highly InformativeDirect

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups1Least InformativeInherited
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Moderately InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0Moderately InformativeDirect
Enzyme Commission (EC)Transferring one-carbon groups1Moderately InformativeInherited
Enzyme Commission (EC)Acyltransferases1Moderately InformativeInherited
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor1Moderately InformativeInherited
Enzyme Commission (EC)Acting on carbon-nitrogen bonds, other than peptide bonds1Moderately InformativeInherited
Enzyme Commission (EC)Ligases1Moderately InformativeInherited
Enzyme Commission (EC)Serine endopeptidases0InformativeDirect
Enzyme Commission (EC)DNA helicase0InformativeDirect
Enzyme Commission (EC)Histone acetyltransferase0.0001344InformativeDirect
Enzyme Commission (EC)In cyclic amidines1InformativeInherited
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compounds1InformativeInherited
Enzyme Commission (EC)Other carbon--nitrogen ligases1InformativeInherited
Enzyme Commission (EC)Phenylalanine--tRNA ligase7.698e-07Highly InformativeDirect
Enzyme Commission (EC)1-phosphatidylinositol-3-phosphate 5-kinase1.625e-06Highly InformativeDirect
Enzyme Commission (EC)Aminopeptidases0.0001848Highly InformativeDirect
Enzyme Commission (EC)Sole sub-subclass for lyases that do not belong in the other subclasses1Highly InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCell cycle0Moderately InformativeDirect
Biological processDNA damage0Moderately InformativeDirect
Biological processTranscription regulation0Moderately InformativeDirect
Biological processDifferentiation7.085e-09Moderately InformativeDirect
Biological processAmino-acid biosynthesis1Moderately InformativeInherited
Biological processDNA recombination0InformativeDirect
Biological processDNA replication0InformativeDirect
Biological processStress response0InformativeDirect
Biological processVirulence4.763e-05InformativeDirect
Biological processMeiosis0.0008291InformativeDirect
Biological processArginine biosynthesis0Highly InformativeDirect
Biological processChromosome partition0Highly InformativeDirect
Biological processDNA condensation0Highly InformativeDirect
Biological processNodulation0Highly InformativeDirect
Biological processSOS response0Highly InformativeDirect
Biological processAntiviral defense2.378e-06Highly InformativeDirect
Cellular componentNucleus0Least InformativeDirect
Cellular componentChromosome0InformativeDirect
Cellular componentProteasome0Highly InformativeDirect
Coding sequence diversityChromosomal rearrangement3.955e-06InformativeDirect
DiseaseProto-oncogene4.398e-14Moderately InformativeDirect
Molecular functionMetal-binding1Least InformativeInherited
Molecular functionNucleotide-binding1Least InformativeInherited
Molecular functionDNA-binding0Moderately InformativeDirect
Molecular function2Fe-2S1.674e-12InformativeDirect
Molecular functioncAMP-binding1.715e-13Highly InformativeDirect
Molecular functionMercury2.276e-09Highly InformativeDirect
Molecular functioncAMP1.759e-07Highly InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationActivator0Moderately InformativeDirect
Post-translational modificationDevelopmental protein0Moderately InformativeDirect
Post-translational modificationRepressor0Moderately InformativeDirect
Post-translational modificationProtease1Moderately InformativeInherited
Post-translational modificationHelicase0InformativeDirect
Post-translational modificationInitiation factor0InformativeDirect
Post-translational modificationGuanine-nucleotide releasing factor0.0002463InformativeDirect
Post-translational modificationAminopeptidase0Highly InformativeDirect
Post-translational modificationSignal transduction inhibitor5.708e-11Highly InformativeDirect
Post-translational modificationAcetylation1.41e-11Least InformativeDirect
Post-translational modificationPhosphoprotein5.019e-11Least InformativeDirect
Post-translational modificationUbl conjugation0Moderately InformativeDirect
Post-translational modificationIsopeptide bond0Moderately InformativeDirect
Post-translational modificationAutocatalytic cleavage0InformativeDirect
Post-translational modificationCitrullination0Highly InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)biopolymer metabolism0Least InformativeDirect
UniPathway (UP)amino-acid metabolism1Least InformativeInherited
UniPathway (UP)protein ubiquitination0Moderately InformativeDirect
UniPathway (UP)aromatic compound biosynthesis0Moderately InformativeDirect
UniPathway (UP)hormone metabolism4.115e-08Moderately InformativeDirect
UniPathway (UP)antibiotic biosynthesis9.507e-06Moderately InformativeDirect
UniPathway (UP)secondary metabolite metabolism1.048e-05Moderately InformativeDirect
UniPathway (UP)amino-acid degradation2.313e-05Moderately InformativeDirect
UniPathway (UP)nitrogen metabolism0.007949Moderately InformativeInherited
UniPathway (UP)L-arginine metabolism0.689Moderately InformativeInherited
UniPathway (UP)hormone biosynthesis4.736e-11InformativeDirect
UniPathway (UP)L-arginine degradation8.369e-07InformativeDirect
UniPathway (UP)toxin biosynthesis2.258e-06InformativeDirect
UniPathway (UP)alkaloid metabolism3.778e-06InformativeDirect
UniPathway (UP)flavonoid biosynthesis1InformativeInherited
UniPathway (UP)L-arginine degradation via ADI pathway7.97e-14Highly InformativeDirect
UniPathway (UP)pterocarpan phytoalexin biosynthesis1.103e-09Highly InformativeDirect
UniPathway (UP)melatonin biosynthesis4.475e-08Highly InformativeDirect
UniPathway (UP)isoquinoline alkaloid biosynthesis4.664e-07Highly InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 208 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a "Winged helix" DNA-binding domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 208 hidden Markov models representing the "Winged helix" DNA-binding domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]